RcppTskit/.pre-commit-config.yaml at main · HighlanderLab/RcppTskit · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
exclude: |
  (?x)^(
    extern/
    | RcppTskit/inst/include/tskit/
    | RcppTskit/src/tskit/
    | RcppTskit/R/RcppExports\.R
    | RcppTskit/src/RcppExports\.cpp
  )

repos:
  - repo: https://github.com/pre-commit/pre-commit-hooks
    rev: v6.0.0
    hooks:
      - id: trailing-whitespace
      - id: end-of-file-fixer
      - id: mixed-line-ending
      - id: check-yaml
      - id: check-added-large-files
      - id: check-merge-conflict

  # - repo: https://github.com/benjeffery/pre-commit-clang-format
  #   rev: "1.0"
  #   hooks:
  #     - id: clang-format
  #       verbose: true

  - repo: local
    hooks:
      - id: air-format
        name: air format
        entry: RcppTskit/tools/run_local_tool.sh air format .
        language: system
        pass_filenames: false
        files: '\.(R|Rmd|rmd|qmd|Qmd)$'

      - id: jarl-lint
        name: jarl lint
        entry: RcppTskit/tools/run_local_tool.sh jarl check .
        language: system
        pass_filenames: false
        files: '\.(R|Rmd|rmd|qmd|Qmd)$'

      - id: clang-format
        name: clang-format
        entry: clang-format -i --style=file
        language: system
        files: '\.(c|cc|cpp|cxx|h|hh|hpp|hxx)$'

      - id: clang-tidy
        name: clang-tidy for RcppTskit
        entry: RcppTskit/tools/clang_tidy.py
        language: system
        files: '\.(c|cc|cpp|cxx|h|hh|hpp|hxx)$'

      - id: check-sync-between-cpp-and-hpp
        name: check sync between cpp and hpp options and defaults
        entry: RcppTskit/tools/check_sync_between_cpp_and_hpp.R
        language: system
        pass_filenames: false
        files: '^(RcppTskit/src/RcppTskit\.cpp|RcppTskit/inst/include/RcppTskit_public\.hpp)$'