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---
title: "High Throughout Genomics Analysis 2021"
author: "Faculty: Mathieu Bourgey, Jared Simpson, Robert Syme, Daniel Poppleton, BF Francis Ouellette, and Rachade Hmamouchi"
date: "September 27, 2021 - September 29, 2021"
site: bookdown::bookdown_site
documentclass: book
bibliography: [book.bib, packages.bib]
url: https://bioinformaticsdotca.github.io/HTG_2021/ # CHANGE THIS LINK TO YOUR LANDING PAGE LINK
cover-image: img/bioinformatics_logo.png
description: |
Workshop website for the 2021 High Throughput Genomics Analysis Canadian Bioinformatics Workshop
link-citations: yes
github-repo: bioinformaticsdotca/HTG_2021 # CHANGE THIS TO YOUR OWN REPO
favicon: img/favicon.ico
---
# (PART) Introduction {-}
# Workshop Info
Welcome to the 2021 High Throughput Genomics Analysis Canadian Bioinformatics Workshop webpage!
## Schedule
| **Time** | **September 27** | **Time** | **September 28** | **Time** | **September 29** |
|:-----:|:--------------------------------------------------------------------:|:-----:|:-------------------------------------------:|:-----:|:------------------------------------:|
| 10:00 | Welcome | 10:00 | Module 3: Lab | 10:00 | Module 5: Structural Variant Calling |
| 10:15 | Module 1: Introduction to Sequencing Technologies & HTS file formats | | | 11:00 | Module 5 lab |
| 12:15 | Break | 12:00 | Break | 12:00 | Break |
| 12:45 | Module 2: data vizualization with IGV | 12:30 | Module 4: Single nucleotide variant Calling | 12:30 | Module 5 lab |
| 13:45 | Break | 13:30 | Break | 13:30 | Break |
| 14:45 | Module 2 lab | 14:30 | Module 4 lab | 14:30 | Module 6: Genome Assembly |
| 15:45 | Module 3: Genome Alignment | | | 15:30 | Module 6 Lab |
| 16:45 | Break | 16:30 | Break | 16:30 | Break |
| 17:15 | Module 3: Lab | 17:00 | Module 4 lab | 17:00 | Module 6 Lab |
| 18:15 | | 17:30 | | 18:00 | Survey & Closing Remarks |
## Pre-work
[You can find your pre-work here.](https://docs.google.com/forms/d/e/1FAIpQLSduaUtrxwV4OQPWXMhFD9TP6GqUlRGy7B3wTa3JB34KJBakUQ/closedform)