From 5d76db8fa6d6433e1bdf57a48fdc0550d7d7c49c Mon Sep 17 00:00:00 2001 From: Michael Dorf Date: Mon, 27 Jul 2026 21:19:18 -0700 Subject: [PATCH] chore: drop sparql-client fork pin; use vanilla 3.2.2 via goo Part of the sparql-client de-fork (ncbo/goo#194). Lock: goo -> 78ff860, ontologies_linked_data -> 29e9fa7, sparql-client 3.2.2 (rubygems), fork GIT source removed. --- Gemfile | 1 - Gemfile.lock | 77 ++++++++++++++++++++++++---------------------------- 2 files changed, 35 insertions(+), 43 deletions(-) diff --git a/Gemfile b/Gemfile index 5f7d357..8e0dd35 100644 --- a/Gemfile +++ b/Gemfile @@ -23,4 +23,3 @@ end # NCBO gems (can be from a local dev path or from rubygems/git) gem 'goo', github: 'ncbo/goo', branch: 'development' gem 'ontologies_linked_data', github: 'ncbo/ontologies_linked_data', branch: 'develop' -gem 'sparql-client', github: 'ncbo/sparql-client', branch: 'development' diff --git a/Gemfile.lock b/Gemfile.lock index 8953bf4..edae8f6 100644 --- a/Gemfile.lock +++ b/Gemfile.lock @@ -8,7 +8,7 @@ GIT GIT remote: https://github.com/ncbo/goo.git - revision: 752fb6b3fe2ec0ba9417397f3283baeac7a9abfc + revision: 78ff8608a1d1350de134ce524ccc31befa172abf branch: development specs: goo (0.0.2) @@ -21,12 +21,12 @@ GIT redis rest-client rsolr - sparql-client + sparql-client (= 3.2.2) uuid GIT remote: https://github.com/ncbo/ontologies_linked_data.git - revision: 6409971110e728b00ec69d43e3f40c9a6f3eb4f1 + revision: 29e9fa79e2a14e3d974f3d17cd1fffc33560fca8 branch: develop specs: ontologies_linked_data (0.0.1) @@ -44,15 +44,6 @@ GIT rsolr rubyzip (~> 3.0) -GIT - remote: https://github.com/ncbo/sparql-client.git - revision: 2ac20b217bb7ad2b11305befe0ee77d75e44eac5 - branch: development - specs: - sparql-client (3.2.2) - net-http-persistent (~> 4.0, >= 4.0.2) - rdf (~> 3.2, >= 3.2.11) - GEM remote: https://rubygems.org/ specs: @@ -78,20 +69,20 @@ GEM bigdecimal (3.3.1) builder (3.3.0) coderay (1.1.3) - concurrent-ruby (1.3.6) + concurrent-ruby (1.3.8) connection_pool (3.0.2) date (3.5.1) docile (1.4.1) domain_name (0.6.20240107) - down (5.5.0) + down (5.6.0) addressable (~> 2.8) base64 (~> 0.3) drb (2.2.3) - faraday (2.14.1) + faraday (2.14.3) faraday-net_http (>= 2.0, < 3.5) json logger - faraday-net_http (3.4.2) + faraday-net_http (3.4.4) net-http (~> 0.5) ffi (1.17.4) ffi (1.17.4-aarch64-linux-gnu) @@ -103,10 +94,10 @@ GEM http-accept (1.7.0) http-cookie (1.1.6) domain_name (~> 0.5) - i18n (1.14.8) + i18n (1.15.2) concurrent-ruby (~> 1.0) io-console (0.8.2) - json (2.19.4) + json (2.21.1) json-canonicalization (1.0.0) json-ld (3.3.2) htmlentities (~> 4.3) @@ -123,7 +114,7 @@ GEM logger (1.7.0) macaddr (1.7.2) systemu (~> 2.6.5) - mail (2.9.0) + mail (2.9.1) logger mini_mime (>= 0.1.1) net-imap @@ -133,9 +124,9 @@ GEM mime-types (3.7.0) logger mime-types-data (~> 3.2025, >= 3.2025.0507) - mime-types-data (3.2026.0414) + mime-types-data (3.2026.0701) mini_mime (1.1.5) - minitest (6.0.5) + minitest (6.0.6) drb (~> 2.0) prism (~> 1.5) minitest-reporters (1.8.0) @@ -143,12 +134,12 @@ GEM builder minitest (>= 5.0, < 7) ruby-progressbar - multi_json (1.20.1) + multi_json (1.21.1) net-http (0.9.1) uri (>= 0.11.1) net-http-persistent (4.0.8) connection_pool (>= 2.2.4, < 4) - net-imap (0.6.3) + net-imap (0.6.6) date net-protocol net-pop (0.1.2) @@ -158,7 +149,7 @@ GEM net-smtp (0.5.1) net-protocol netrc (0.11.0) - oj (3.17.0) + oj (3.17.4) bigdecimal (>= 3.0) ostruct (>= 0.2) omni_logger (0.1.4) @@ -199,7 +190,7 @@ GEM reline redis (5.4.1) redis-client (>= 0.22.0) - redis-client (0.28.0) + redis-client (0.30.1) connection_pool reline (0.6.3) io-console (~> 0.5) @@ -216,7 +207,7 @@ GEM faraday (>= 0.9, < 3, != 2.0.0) ruby-progressbar (1.13.0) ruby-xxHash (0.4.0.2) - rubyzip (3.2.2) + rubyzip (3.4.1) securerandom (0.4.1) simplecov (0.22.0) docile (~> 1.1) @@ -227,6 +218,9 @@ GEM simplecov (~> 0.19) simplecov-html (0.13.2) simplecov_json_formatter (0.1.4) + sparql-client (3.2.2) + net-http-persistent (~> 4.0, >= 4.0.2) + rdf (~> 3.2, >= 3.2.11) systemu (2.6.5) timeout (0.6.1) tzinfo (2.0.6) @@ -262,7 +256,6 @@ DEPENDENCIES ruby-xxHash simplecov simplecov-cobertura - sparql-client! CHECKSUMS activesupport (8.1.3) sha256=21a5e0dfbd4c3ddd9e1317ec6a4d782fa226e7867dc70b0743acda81a1dca20e @@ -274,15 +267,15 @@ CHECKSUMS bigdecimal (3.3.1) sha256=eaa01e228be54c4f9f53bf3cc34fe3d5e845c31963e7fcc5bedb05a4e7d52218 builder (3.3.0) sha256=497918d2f9dca528fdca4b88d84e4ef4387256d984b8154e9d5d3fe5a9c8835f coderay (1.1.3) sha256=dc530018a4684512f8f38143cd2a096c9f02a1fc2459edcfe534787a7fc77d4b - concurrent-ruby (1.3.6) sha256=6b56837e1e7e5292f9864f34b69c5a2cbc75c0cf5338f1ce9903d10fa762d5ab + concurrent-ruby (1.3.8) sha256=b2f1be836e968ccc78ccfce277ea79c72a88633f22306782c16ff23fb415d1e1 connection_pool (3.0.2) sha256=33fff5ba71a12d2aa26cb72b1db8bba2a1a01823559fb01d29eb74c286e62e0a date (3.5.1) sha256=750d06384d7b9c15d562c76291407d89e368dda4d4fff957eb94962d325a0dc0 docile (1.4.1) sha256=96159be799bfa73cdb721b840e9802126e4e03dfc26863db73647204c727f21e domain_name (0.6.20240107) sha256=5f693b2215708476517479bf2b3802e49068ad82167bcd2286f899536a17d933 - down (5.5.0) sha256=787e14fcfe7824b8cac676c608359e4083b2e4d6e1d3b1745b79f27bcf931585 + down (5.6.0) sha256=48ec6ddb078cbf3b425d02596bb388303316f976143c6e94a7b3169d6712b593 drb (2.2.3) sha256=0b00d6fdb50995fe4a45dea13663493c841112e4068656854646f418fda13373 - faraday (2.14.1) sha256=a43cceedc1e39d188f4d2cdd360a8aaa6a11da0c407052e426ba8d3fb42ef61c - faraday-net_http (3.4.2) sha256=f147758260d3526939bf57ecf911682f94926a3666502e24c69992765875906c + faraday (2.14.3) sha256=1882247e6766615c8220b4392bf1d27f6ebb63d8e28267587cef1fb0bf37f278 + faraday-net_http (3.4.4) sha256=0e78af151747ed1b00f33e25973b4bc220d7f16c00c39676817c8b12331eb588 ffi (1.17.4) sha256=bcd1642e06f0d16fc9e09ac6d49c3a7298b9789bcb58127302f934e437d60acf ffi (1.17.4-aarch64-linux-gnu) sha256=b208f06f91ffd8f5e1193da3cae3d2ccfc27fc36fba577baf698d26d91c080df ffi (1.17.4-arm-linux-gnu) sha256=d6dbddf7cb77bf955411af5f187a65b8cd378cb003c15c05697f5feee1cb1564 @@ -293,9 +286,9 @@ CHECKSUMS htmlentities (4.4.2) sha256=bbafbdf69f2eca9262be4efef7e43e6a1de54c95eb600f26984f71d2fe96c5c3 http-accept (1.7.0) sha256=c626860682bfbb3b46462f8c39cd470fd7b0584f61b3cc9df5b2e9eb9972a126 http-cookie (1.1.6) sha256=ba4b82be64de61dc281243dac70e3c382c45142f20268ed9276a3670c93feaa9 - i18n (1.14.8) sha256=285778639134865c5e0f6269e0b818256017e8cde89993fdfcbfb64d088824a5 + i18n (1.15.2) sha256=00f9eb62412fe593b2a65a97daa75300d37abb8f7202ec748e94b6d46a9dd1b5 io-console (0.8.2) sha256=d6e3ae7a7cc7574f4b8893b4fca2162e57a825b223a177b7afa236c5ef9814cc - json (2.19.4) sha256=670a7d333fb3b18ca5b29cb255eb7bef099e40d88c02c80bd42a3f30fe5239ac + json (2.21.1) sha256=13a43df75d95641443f5702dff350f237164a9d811ff0f2c2800d4d980220583 json-canonicalization (1.0.0) sha256=d4848a8cca7534455c6721f2d9fc9e5e9adca49486864a898810024f67d59446 json-ld (3.3.2) sha256=b9531893bf5bdc01db428e96953845a23adb1097125ce918ae0f97c4a6e1ab27 jwt (3.1.2) sha256=af6991f19a6bb4060d618d9add7a66f0eeb005ac0bc017cd01f63b42e122d535 @@ -303,22 +296,22 @@ CHECKSUMS link_header (0.0.8) sha256=15c65ce43b29f739b30d05e5f25c22c23797e89cf6f905dbb595fb4c70cb55f9 logger (1.7.0) sha256=196edec7cc44b66cfb40f9755ce11b392f21f7967696af15d274dde7edff0203 macaddr (1.7.2) sha256=da377809968bbc1160bf02a999e916bb3255000007291d9d1a49a93ceedadf82 - mail (2.9.0) sha256=6fa6673ecd71c60c2d996260f9ee3dd387d4673b8169b502134659ece6d34941 + mail (2.9.1) sha256=06574eca475253d6c18145dd70af80d0eb970182d55053497c5f4d797ea160e8 method_source (1.1.0) sha256=181301c9c45b731b4769bc81e8860e72f9161ad7d66dd99103c9ab84f560f5c5 mime-types (3.7.0) sha256=dcebf61c246f08e15a4de34e386ebe8233791e868564a470c3fe77c00eed5e56 - mime-types-data (3.2026.0414) sha256=461c4c655373a44bd6c5fe54bcf5b7776026ea96e808144b1ec465c4b99148cc + mime-types-data (3.2026.0701) sha256=cd8811e1fb89d836499ba0582368a10ee74cef929ba956d1d5ddca045e6a730f mini_mime (1.1.5) sha256=8681b7e2e4215f2a159f9400b5816d85e9d8c6c6b491e96a12797e798f8bccef - minitest (6.0.5) sha256=f007d7246bf4feea549502842cd7c6aba8851cdc9c90ba06de9c476c0d01155c + minitest (6.0.6) sha256=153ea36d1d987a62942382b61075745042a2b3123b1cd48f4c3675af9cc7d6f1 minitest-reporters (1.8.0) sha256=8ce5280fb73ad3178ae525454df169b6f28c1b38b1d088ea91815d3a370ba384 - multi_json (1.20.1) sha256=2f3934e805cc45ef91b551a1f89d0e9191abd06a5e04a2ef09a6a036c452ca6d + multi_json (1.21.1) sha256=e6126a31808e3b4d19f483c775ceac34df190dffa62adfb63a165ee14ba68080 net-http (0.9.1) sha256=25ba0b67c63e89df626ed8fac771d0ad24ad151a858af2cc8e6a716ca4336996 net-http-persistent (4.0.8) sha256=ef3de8319d691537b329053fae3a33195f8b070bbbfae8bf1a58c796081960e6 - net-imap (0.6.3) sha256=9bab75f876596d09ee7bf911a291da478e0cd6badc54dfb82874855ccc82f2ad + net-imap (0.6.6) sha256=96aa4ee50df3060203e649efc341f53480b791d49e150f2fdebf68beb141a8df net-pop (0.1.2) sha256=848b4e982013c15b2f0382792268763b748cce91c9e91e36b0f27ed26420dff3 net-protocol (0.2.2) sha256=aa73e0cba6a125369de9837b8d8ef82a61849360eba0521900e2c3713aa162a8 net-smtp (0.5.1) sha256=ed96a0af63c524fceb4b29b0d352195c30d82dd916a42f03c62a3a70e5b70736 netrc (0.11.0) sha256=de1ce33da8c99ab1d97871726cba75151113f117146becbe45aa85cb3dabee3f - oj (3.17.0) sha256=5684b2127fb70e650fae90df521b91336ff8e55e2e1011ed80eb0283beac5360 + oj (3.17.4) sha256=733fe3bcb7a5d985bd2e943620b7bea1bffb2809318af7021c841b833a6858e1 omni_logger (0.1.4) sha256=b61596f7d96aa8426929e46c3500558d33e838e1afd7f4735244feb4d082bb3e ontologies_linked_data (0.0.1) ontoportal_testkit (0.1.0) @@ -337,7 +330,7 @@ CHECKSUMS rdf-xsd (3.3.0) sha256=fab51d27b20344237d9b622ef32e83e4c44940840bfc76a245ce6b6abba44772 readline (0.0.4) sha256=6138eef17be2b98298b672c3ea63bf9cb5158d401324f26e1e84f235879c1d6a redis (5.4.1) sha256=b5e675b57ad22b15c9bcc765d5ac26f60b675408af916d31527af9bd5a81faae - redis-client (0.28.0) sha256=888892f9cd8787a41c0ece00bdf5f556dfff7770326ce40bb2bc11f1bfec824b + redis-client (0.30.1) sha256=5151bc5c7bbfe48623732cdae3b900d8a22dc691cc7cdfacfb351ac55116522d reline (0.6.3) sha256=1198b04973565b36ec0f11542ab3f5cfeeec34823f4e54cebde90968092b1835 request_store (1.7.0) sha256=e1b75d5346a315f452242a68c937ef8e48b215b9453a77a6c0acdca2934c88cb rest-client (2.1.0) sha256=35a6400bdb14fae28596618e312776c158f7ebbb0ccad752ff4fa142bf2747e3 @@ -345,13 +338,13 @@ CHECKSUMS rsolr (2.6.0) sha256=4b3bcea772cac300562775c20eeddedf63a6b7516a070cb6fbde000b09cfe12b ruby-progressbar (1.13.0) sha256=80fc9c47a9b640d6834e0dc7b3c94c9df37f08cb072b7761e4a71e22cff29b33 ruby-xxHash (0.4.0.2) sha256=201d8305ec1bd0bc32abeaecf7b423755dd1f45f4f4d02ef793b6bb71bf20684 - rubyzip (3.2.2) sha256=c0ed99385f0625415c8f05bcae33fe649ed2952894a95ff8b08f26ca57ea5b3c + rubyzip (3.4.1) sha256=0a79e745b5c25872ebd148457df5665da8530ed8626c993b01457128f173ca02 securerandom (0.4.1) sha256=cc5193d414a4341b6e225f0cb4446aceca8e50d5e1888743fac16987638ea0b1 simplecov (0.22.0) sha256=fe2622c7834ff23b98066bb0a854284b2729a569ac659f82621fc22ef36213a5 simplecov-cobertura (3.1.0) sha256=6d7f38aa32c965ca2174b2e5bd88cb17138eaf629518854976ac50e628925dc5 simplecov-html (0.13.2) sha256=bd0b8e54e7c2d7685927e8d6286466359b6f16b18cb0df47b508e8d73c777246 simplecov_json_formatter (0.1.4) sha256=529418fbe8de1713ac2b2d612aa3daa56d316975d307244399fa4838c601b428 - sparql-client (3.2.2) + sparql-client (3.2.2) sha256=d3bac6bea08598dad617c0cdc6d380f9d416ef4ab91ca28309fdf40b93f5a571 systemu (2.6.5) sha256=01f7d014b1453b28e5781e15c4d7d63fc9221c29b174b7aae5253207a75ab33e timeout (0.6.1) sha256=78f57368a7e7bbadec56971f78a3f5ecbcfb59b7fcbb0a3ed6ddc08a5094accb tzinfo (2.0.6) sha256=8daf828cc77bcf7d63b0e3bdb6caa47e2272dcfaf4fbfe46f8c3a9df087a829b