diff --git a/tutorial-registry/categories.yml b/tutorial-registry/categories.yml index 6694f4b..dc517e5 100644 --- a/tutorial-registry/categories.yml +++ b/tutorial-registry/categories.yml @@ -16,10 +16,6 @@ description: | Tutorials for analyzing single-cell B-cell and T-cell receptor sequencing data -- Cell-cell communication: - description: | - Infer and analyse interactions between cells - - Surface proteins: description: | CITE-seq analyses diff --git a/tutorial-registry/schema.json b/tutorial-registry/schema.json index 5bd9b14..60ae5d1 100644 --- a/tutorial-registry/schema.json +++ b/tutorial-registry/schema.json @@ -31,7 +31,6 @@ "scRNA-seq", "Spatial", "Adaptive immune cell receptor", - "Cell-cell communication", "Surface proteins", "ATAC-seq", "Multimodal", diff --git a/tutorial-registry/tutorials/bentotools-subcellular-resolution/icon.png b/tutorial-registry/tutorials/bentotools-subcellular-resolution/icon.png deleted file mode 100644 index cbb63d7..0000000 Binary files a/tutorial-registry/tutorials/bentotools-subcellular-resolution/icon.png and /dev/null differ diff --git a/tutorial-registry/tutorials/bentotools-subcellular-resolution/meta.yaml b/tutorial-registry/tutorials/bentotools-subcellular-resolution/meta.yaml deleted file mode 100644 index b6e3fa9..0000000 --- a/tutorial-registry/tutorials/bentotools-subcellular-resolution/meta.yaml +++ /dev/null @@ -1,14 +0,0 @@ -name: Spatial analysis with squidpy -description: | - Analyse transcriptomics data with spatial resolution using squidpy. -link: https://squidpy.readthedocs.io/en/latest/notebooks/tutorials/tutorial_vizgen_mouse_liver.html -image: icon.png -primary_category: Spatial -order: 10 -tags: - - preprocessing - - visualization -packages: - - squidpy -authors: - - giovp diff --git a/tutorial-registry/tutorials/liana-ligand-receptor/meta.yaml b/tutorial-registry/tutorials/liana-ligand-receptor/meta.yaml index cbd892b..5b0c3d7 100644 --- a/tutorial-registry/tutorials/liana-ligand-receptor/meta.yaml +++ b/tutorial-registry/tutorials/liana-ligand-receptor/meta.yaml @@ -3,8 +3,8 @@ description: | Infer ligand-receptor interactions between cell types and aggregate the methods into a consensus ranking. link: https://liana-py.readthedocs.io/en/latest/notebooks/basic_usage.html image: icon.png -primary_category: Cell-cell communication -order: 10 +primary_category: scRNA-seq +order: 120 modality: - RNA tags: diff --git a/tutorial-registry/tutorials/squidpy-spatial/icon.png b/tutorial-registry/tutorials/squidpy-spatial/icon.png index 13f7691..cbb63d7 100644 Binary files a/tutorial-registry/tutorials/squidpy-spatial/icon.png and b/tutorial-registry/tutorials/squidpy-spatial/icon.png differ diff --git a/tutorial-registry/tutorials/squidpy-spatial/meta.yaml b/tutorial-registry/tutorials/squidpy-spatial/meta.yaml index 817fef3..b6e3fa9 100644 --- a/tutorial-registry/tutorials/squidpy-spatial/meta.yaml +++ b/tutorial-registry/tutorials/squidpy-spatial/meta.yaml @@ -1,14 +1,14 @@ -name: Spatial analysis at subcellular resolution +name: Spatial analysis with squidpy description: | - Study gene expression at subcellular resolution with bento-tools. -link: https://bento-tools.readthedocs.io/en/latest/index.html + Analyse transcriptomics data with spatial resolution using squidpy. +link: https://squidpy.readthedocs.io/en/latest/notebooks/tutorials/tutorial_vizgen_mouse_liver.html image: icon.png primary_category: Spatial -order: 30 +order: 10 tags: - preprocessing - visualization packages: - - bento-tools + - squidpy authors: - - ckmah + - giovp