diff --git a/tutorial-registry/tutorials/spatialdata-xenium/icon.svg b/tutorial-registry/tutorials/spatialdata-xenium/icon.svg deleted file mode 100644 index 728efc5..0000000 --- a/tutorial-registry/tutorials/spatialdata-xenium/icon.svg +++ /dev/null @@ -1,108 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/tutorial-registry/tutorials/spatialdata-xenium/meta.yaml b/tutorial-registry/tutorials/spatialdata-xenium/meta.yaml deleted file mode 100644 index 0ba3e9a..0000000 --- a/tutorial-registry/tutorials/spatialdata-xenium/meta.yaml +++ /dev/null @@ -1,20 +0,0 @@ -name: Reading Xenium data with SpatialData -description: | - Read a 10x Genomics Xenium experiment and explore transcripts, cell boundaries and morphology images. -link: https://spatialdata.scverse.org/en/stable/tutorials/notebooks/notebooks/examples/technology_xenium.html -image: icon.svg -primary_category: Spatial -order: 5 -modality: - - spatial - - RNA -tags: - - data structures - - preprocessing - - visualization -packages: - - spatialdata - - spatialdata-io -authors: - - LucaMarconato - - giovp diff --git a/tutorial-registry/tutorials/squidpy-xenium/icon.svg b/tutorial-registry/tutorials/squidpy-xenium/icon.svg new file mode 100644 index 0000000..3b74b65 --- /dev/null +++ b/tutorial-registry/tutorials/squidpy-xenium/icon.svg @@ -0,0 +1,80 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/tutorial-registry/tutorials/squidpy-xenium/meta.yaml b/tutorial-registry/tutorials/squidpy-xenium/meta.yaml new file mode 100644 index 0000000..b8cede0 --- /dev/null +++ b/tutorial-registry/tutorials/squidpy-xenium/meta.yaml @@ -0,0 +1,23 @@ +name: Analyze Xenium data with SpatialData and squidpy +description: | + Read a Xenium dataset with spatialdata-io, then run quality control, clustering and spatial statistics with squidpy. +link: https://squidpy.readthedocs.io/en/latest/notebooks/tutorials/tutorial_xenium.html +image: icon.svg +primary_category: Spatial +order: 5 +modality: + - spatial + - RNA +tags: + - quality control + - preprocessing + - visualization +packages: + - squidpy + - spatialdata + - spatialdata-io + - scanpy + - anndata +authors: + - LLehner + - giovp