Hello!
I am using the Napari STracking plugin to detect features in my image (DoG detector). I want to detect the features in only particular frames (cause I have other features similar in different frames in different images that I don't want to detect). I want to do this using code (in Python using Spyder) to automate and create a pipeline according to my acquisitions.
For this, I am specifying the frames I want to detect, and then converting them into a numpy 3D array. I specify that this array belongs to my image, so the detection is on my original image itself. I think the detection is being done on the frame I asked for, but the points are being added in the frames from the beginning. For example, I am specifying that I need detection in frames 4 and 5, but the points are being added in 0 and 1.
I think the reason is that in this new 3D array, my frames 4 and 5 are indexed from 0 and 1, and the points layer basically considers that and adds the points on the frames 0 and 1 on my original image. I tried to access the SParticle object to understand and solve this issue, but I am not sure how to. It would be really helpful if this problem is solved.
I have attached my code in a .txt file, and the problems as screenshots, as this problem is really difficult to explain in words. Hope it helps!
Napari_Point_Problem_Code.txt
Hello!
I am using the Napari STracking plugin to detect features in my image (DoG detector). I want to detect the features in only particular frames (cause I have other features similar in different frames in different images that I don't want to detect). I want to do this using code (in Python using Spyder) to automate and create a pipeline according to my acquisitions.
For this, I am specifying the frames I want to detect, and then converting them into a numpy 3D array. I specify that this array belongs to my image, so the detection is on my original image itself. I think the detection is being done on the frame I asked for, but the points are being added in the frames from the beginning. For example, I am specifying that I need detection in frames 4 and 5, but the points are being added in 0 and 1.
I think the reason is that in this new 3D array, my frames 4 and 5 are indexed from 0 and 1, and the points layer basically considers that and adds the points on the frames 0 and 1 on my original image. I tried to access the SParticle object to understand and solve this issue, but I am not sure how to. It would be really helpful if this problem is solved.
I have attached my code in a .txt file, and the problems as screenshots, as this problem is really difficult to explain in words. Hope it helps!
Napari_Point_Problem_Code.txt