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3dem

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  1. relion relion Public

    Image-processing software for cryo-electron microscopy

    C++ 541 229

  2. relion-documents relion-documents Public

    Documentations for RELION

    TeX 15 12

  3. model-angelo model-angelo Public

    Automatic atomic model building program for cryo-EM maps

    Python 171 28

  4. DynaMight DynaMight Public

    Tool for reconstruction and analysis of continuous heterogeneity of a cryo-EM dataset

    Python 34 9

  5. topaz topaz Public

    Forked from tbepler/topaz

    Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising w…

    Jupyter Notebook 8 4

  6. relion-blush relion-blush Public

    Blush refinement - For use in RELION-5

    Python 9 4

Repositories

Showing 10 of 21 repositories
  • emtools Public

    Basic utilities for CryoEM data manipulation

    3dem/emtools’s past year of commit activity
    Python 5 GPL-3.0 1 1 0 Updated Jul 7, 2026
  • emwrap Public

    Python wrappers for CryoEM programs

    3dem/emwrap’s past year of commit activity
    Python 1 GPL-3.0 0 0 2 Updated Jul 7, 2026
  • emhub Public

    Web application for monitor EM results

    3dem/emhub’s past year of commit activity
    Python 13 GPL-3.0 6 8 1 Updated Jul 7, 2026
  • model-angelo Public

    Automatic atomic model building program for cryo-EM maps

    3dem/model-angelo’s past year of commit activity
    Python 171 MIT 28 42 1 Updated Jun 15, 2026
  • qscore Public

    Q-score in pure Python without requiring Chimera

    3dem/qscore’s past year of commit activity
    Python 4 MIT 2 0 0 Updated Jun 10, 2026
  • relion Public

    Image-processing software for cryo-electron microscopy

    3dem/relion’s past year of commit activity
    C++ 541 GPL-2.0 229 252 (5 issues need help) 11 Updated May 31, 2026
  • APD Public

    Amyloid Packing Difference

    3dem/APD’s past year of commit activity
    Python 4 MIT 3 0 0 Updated Apr 8, 2026
  • relion-documents Public

    Documentations for RELION

    3dem/relion-documents’s past year of commit activity
    TeX 15 GPL-3.0 12 3 1 Updated Mar 13, 2026
  • emconfig Public

    Configuration files for emwrap/emhub, providing jobs parameters description and shell script launchers

    3dem/emconfig’s past year of commit activity
    Shell 0 0 0 0 Updated Jan 29, 2026
  • topaz Public Forked from tbepler/topaz

    Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.

    3dem/topaz’s past year of commit activity
    Jupyter Notebook 8 GPL-3.0 75 0 1 Updated Jan 8, 2026

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