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Achievement: Pull Sharkx2Achievement: YOLOAchievement: Quickdraw

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@KhalidLab

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Aleksandr-biochem/README.md

Alek Kovalenko 💻📈

My passion is to develop quality code for reproducible and transferable computational research

👨‍💻 Molecular Dynamics and Structural Bioinformatics
🦠 Postgraduate student at the Laborotory of Computational Microbiology, Department of Biochemistry, University of Oxford
🎓 From BSc in Chemistry to MSc in Bioinformatrics and working towards PhD in Biochemistry

Find me on:

Bluesky LinkedIn


💻 Skills:

Python Pandas NumPy SciPy Matplotlib Plotly StreamLit

Machine learning:
scikit-learn PyTorch

Other:
R Shell Script GitHub Git

Pinned Loading

  1. de_novo_miniprotein_design de_novo_miniprotein_design Public

    Jupyter Notebook 3 1

  2. qr_generator qr_generator Public

    Free-to-use lightweight QR code generator with backend in Rust compiled to WebAssembly.

    Rust 1

  3. covid-spike-binders-analysis covid-spike-binders-analysis Public

    This repository provides results and code for the project "Analysis and construction of SARS-CoV-2 neutralizing ligands with extensive Spike binding"

    Python

  4. md_project_cookiecutter md_project_cookiecutter Public

    A cookiecutter template for a Molecular Dynamics simulation project

    Jupyter Notebook

  5. snakemake_md_tutorial snakemake_md_tutorial Public

    A quickstart tutorial on snakemake with sample data

    Python

  6. yamdtools yamdtools Public

    yamdtools is a Python3 mini-library compiled from the tools that I use on a daily basis in my research work for Molecular Dynamics simulations analysis.

    Python