The Epidemic Prognosis Incorporating Disease and Environmental Monitoring for Integrated Assessment (EPIDEMIA) Forecasting System is a set of tools coded in free, open-access software, that integrate surveillance and environmental data to model and create short-term forecasts for environmentally-mediated diseases.
This R package contains the functions for modeling, forecasting, validation, and early detection & early warning alerts.
For producing formatted reports, see also the demo project based on malaria in Ethiopia (with demo data): https://github.com/EcoGRAPH/epidemiar-demo
EPIDEMIA project: http://ecograph.net/epidemia/