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@Huang-lab

Huang Lab

Precision Omics Lab at Icahn School of Mount Sinai (PI: Kuan-lin Huang)

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  1. fastVEP fastVEP Public

    fastVEP: High-performance Variant Effect Predictor in Rust

    Rust 149 30

  2. RastQC RastQC Public

    RastQC - Combining FastQC, MultiQC, longread QC functionality for high-throughput sequencing data, written in Rust

    Rust 57 4

  3. figure-extractor figure-extractor Public

    Flask-based service using PDFFigures 2.0 to extract figures and tables from scholarly PDFs. Features REST API, CLI, Docker support, and JSON metadata output (~1.5s/page processing). Designed for do…

    Python 17 4

  4. AeQTL AeQTL Public

    Python 4 4

  5. CoMutCNV CoMutCNV Public

    Investigation of Co-occurrence of CNA and Mutations

    R 4

  6. SParCS SParCS Public

    HTML 3 3

Repositories

Showing 10 of 62 repositories
  • AiGCT Public
    Huang-lab/AiGCT's past year of commit activity
    Python 1 MIT 0 2 0 Updated Sep 20, 2026
  • germline-plp-carrier-nf Public

    P/LP annotation (ClinVar, ACMG/AMP, calibrated AlphaMissense) and carrier identification nf pipeline

    Huang-lab/germline-plp-carrier-nf's past year of commit activity
    Python 1 MIT 0 1 1 Updated Sep 17, 2026
  • WTC_PRAD_VisiumHD_Recurrence Public
    Huang-lab/WTC_PRAD_VisiumHD_Recurrence's past year of commit activity
    0 MIT 0 0 0 Updated Sep 17, 2026
  • fastVEP Public

    fastVEP: High-performance Variant Effect Predictor in Rust

    Huang-lab/fastVEP's past year of commit activity
    Rust 149 Apache-2.0 30 1 1 Updated Sep 17, 2026
  • TRACE-Kin Public

    Graph neural network for predicting enzyme kinetic parameters (Km, kcat, Ki, Kd, kcat/Km) from protein sequence and ligand SMILES. The v7 architecture couples a GATv2 + global-attention structure stream to uncompressed protein-language-model embeddings via pocket-conditioned readout. Adapted from PSICHIC.

    Huang-lab/TRACE-Kin's past year of commit activity
    Python 0 Apache-2.0 0 7 2 Updated Sep 15, 2026
  • RastQC Public

    RastQC - Combining FastQC, MultiQC, longread QC functionality for high-throughput sequencing data, written in Rust

    Huang-lab/RastQC's past year of commit activity
    Rust 57 MIT 4 1 0 Updated Sep 11, 2026
  • hypothyroid_nonresponder Public

    Identify GWAS/Proteomics biomarkers for hypothyroidism non-responders (do not respond to standard T4 treatment)

    Huang-lab/hypothyroid_nonresponder's past year of commit activity
    0 MIT 0 0 0 Updated Sep 10, 2026
  • AOU_research_primer Public
    Huang-lab/AOU_research_primer's past year of commit activity
    2 Apache-2.0 0 0 8 Updated Sep 10, 2026
  • AiGCTWeb Public

    AIGCT Web Portal

    Huang-lab/AiGCTWeb's past year of commit activity
    Python 1 MIT 0 0 0 Updated Sep 9, 2026
  • VarCrawl Public
    Huang-lab/VarCrawl's past year of commit activity
    TypeScript 1 MIT 2 0 0 Updated Sep 3, 2026
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