Add nvskills support

.claude/skills

@@ -1 +1 @@
-../agent/skills
+../skills

.github/workflows/skill-packaging.yml

@@ -0,0 +1,28 @@
+name: Skill packaging
+
+on:
+  pull_request:
+    paths:
+      - 'skills/**'
+      - 'tests/skills/**'
+      - '.claude/skills'
+      - '.github/workflows/skill-packaging.yml'
+  push:
+    paths:
+      - 'skills/**'
+      - 'tests/skills/**'
+      - '.claude/skills'
+      - '.github/workflows/skill-packaging.yml'
+
+permissions:
+  contents: read
+
+jobs:
+  check:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - name: Verify bundled shared files
+        run: python3 skills/_shared/sync_shared.py --check
+      - name: Check independently installed skills
+        run: python3 -m unittest discover -s tests/skills -p test_skill_packaging.py

AGENTS.md

@@ -1,8 +1,8 @@
 # Agent integrations
 
-Agent-driven workflows for KERMT live under [`agent/`](agent/README.md). The
+Agent-driven workflows for KERMT live under [`skills/`](skills/README.md). The
 skills follow the [agentskills.io](https://agentskills.io) spec — one
-directory per skill at `agent/skills/<skill-name>/SKILL.md`.
+directory per skill at `skills/<skill-name>/SKILL.md`.
 
 Available workflows:
 - `kermt-setup` — bootstrap the kermt container (run first)
@@ -14,7 +14,13 @@ Available workflows:
 - `kermt-embed` — extract molecular embeddings from any encoder-bearing ckpt
 - `kermt-monitor` — tail logs / report progress for a detached run
 
-See [`agent/README.md`](agent/README.md) for the full guide: hardware
+See [`skills/README.md`](skills/README.md) for the full guide: hardware
 requirements per workflow, how to install the skills with Claude Code /
 Codex / Nemotron, and how to invoke the underlying scripts directly without
 an agent.
+
+Shared helpers and defaults are maintained in `skills/_shared/`. After editing
+them, run `python3 skills/_shared/sync_shared.py --write` and commit the
+per-skill copies; `--check` verifies they match. Each skill must use its
+own bundled files so it can be installed and signed independently.
+Development tests remain under `tests/skills/`.

Dockerfile

@@ -38,7 +38,7 @@ RUN conda clean -afy
 
 # Note: the repo is NOT copied into the image. Agent skills and any equivalent
 # host workflow bind-mount the live kermt repo checkout at /workspace (see
-# agent/scripts/kermt_container.sh). Keeping the image as a pure environment
+# skills/_shared/scripts/kermt_container.sh). Keeping the image as a pure environment
 # makes rebuilds cache-friendly (only invalidates when environment.yml changes,
 # not on every code edit) and avoids stale-code footguns where a baked-in /code
 # and the runtime bind-mount disagree.