Sarder Lab
Codes for computational pathology from Pinaki Sarder's lab
- 29 followers
- United States of America
- pinaki.sarder@ufl.edu
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Repositories
Showing 10 of 105 repositories
- girder-instance-transfer Public
Transfer selected folders, items, files, metadata, and descriptions between Athena, Parashurama, and other Girder instances, with restart-safe pagination, retries, and duplicate-file skipping.
- CombinedFeatureExtraction Public
- Histo-cloud Public
- fusion-packages Public
Python package distributions built from fusion repositories and utility functions
- FUSION-Notebook-Tutorial Public
- prop-fusion-gene-expression-overlay Public
Proposal to prepare and visualize per-cell gene expression data from Xenium Ranger output overlaid on co-registered H&E whole slide images (WSI) in the FUSION 2.0 pipeline.
- prop-spot-annotation Public
Proposal of how to add grouped cell type annotations to a Seurat RDS file output by the FUSION label transfer step, as a precursor to spot annotation. This is a demo codebase and not a production plugin.
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