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@Teichlab

Teichmann Group

Sarah Teichmann's group at University of Cambridge: Cambridge Stem Cell Institute & Department of Medicine

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  1. celltypist celltypist Public

    A tool for semi-automatic cell type classification

    Python 501 59

  2. cellhint cellhint Public

    A tool for semi-automatic cell type harmonization and integration

    Python 121 17

  3. drug2cell drug2cell Public

    Gene group activity utility functions for Scanpy

    Jupyter Notebook 116 5

  4. bin2cell bin2cell Public

    Join subcellular Visium HD bins into cells

    Python 143 13

  5. Genes2Genes Genes2Genes Public

    Aligning gene expression trajectories of single-cell reference and query systems

    Jupyter Notebook 90 13

  6. cell2tcr cell2tcr Public

    Inference of TCR motifs

    Jupyter Notebook 33 3

Repositories

Showing 10 of 87 repositories
  • snp2cell Public

    cell type specific, trait-associated gene regulation

    Teichlab/snp2cell's past year of commit activity
    Python 30 BSD-3-Clause 0 0 0 Updated Aug 5, 2026
  • csd3-scripts Public

    Various utility scripts for CSD3 survival

    Teichlab/csd3-scripts's past year of commit activity
    Shell 1 0 0 0 Updated Jul 31, 2026
  • Teichlab/Developing_heart_atlas's past year of commit activity
    Jupyter Notebook 4 1 0 0 Updated Jul 29, 2026
  • TissueTypist Public
    Teichlab/TissueTypist's past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jul 29, 2026
  • Genes2Genes Public

    Aligning gene expression trajectories of single-cell reference and query systems

    Teichlab/Genes2Genes's past year of commit activity
    Jupyter Notebook 90 MIT 13 10 2 Updated Jul 28, 2026
  • thy_transp Public

    Repository holding all scripts to reproduce analyses for the manuscript "Transplantation of human thymus regenerates chimeric niches supporting T-cell development and immune tolerance" by Suo, Sarropoulos, Yayon et al.

    Teichlab/thy_transp's past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jul 20, 2026
  • HOCA Public
    Teichlab/HOCA's past year of commit activity
    Python 1 0 0 0 Updated Jul 17, 2026
  • MorphoFM Public

    Morphological features extraction package

    Teichlab/MorphoFM's past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Jul 6, 2026
  • hormone2cell Public

    Predict hormone producing/receiving strength in single cell datasets.

    Teichlab/hormone2cell's past year of commit activity
    Python 3 MIT 1 0 0 Updated Jul 2, 2026
  • cell2clone Public

    Infer adaptive lymphocyte clonality from single-cell transcriptomics without antigen receptor sequencing data

    Teichlab/cell2clone's past year of commit activity
    Python 0 MIT 0 0 0 Updated Jun 29, 2026

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