I'm sure this is an issue with me having never used snakemake before, but here goes:
I followed the steps on the github readme (test and building diamond database all worked perfectly), and am now trying to start the actual MAGpy process using the command:
snakemake -rp -s MAGpy --use-conda MAGpy --cores 8
My MAGs are in the mags directory in the cloned github repo.
The process fails with below message:
Building DAG of jobs... MissingRuleException: No rule to produce MAGpy (if you use input functions make sure that they don't raise unexpected exceptions).
Could you point me in the right direction?
Thank you!
I'm sure this is an issue with me having never used snakemake before, but here goes:
I followed the steps on the github readme (test and building diamond database all worked perfectly), and am now trying to start the actual MAGpy process using the command:
snakemake -rp -s MAGpy --use-conda MAGpy --cores 8My MAGs are in the mags directory in the cloned github repo.
The process fails with below message:
Building DAG of jobs... MissingRuleException: No rule to produce MAGpy (if you use input functions make sure that they don't raise unexpected exceptions).Could you point me in the right direction?
Thank you!