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Sync fbapkg/problemreplicationpkg.py from freiburgermsu fork #68

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Sync fbapkg/problemreplicationpkg.py from freiburgermsu fork #68

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18 changes: 8 additions & 10 deletions modelseedpy/fbapkg/problemreplicationpkg.py
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Original file line number Diff line number Diff line change
Expand Up @@ -2,12 +2,10 @@

from __future__ import absolute_import

import logging
from optlang import Variable
from optlang.symbolics import Zero, add

from modelseedpy.fbapkg.basefbapkg import BaseFBAPkg
from modelseedpy.fbapkg.revbinpkg import RevBinPkg
from modelseedpy.fbapkg.totalfluxpkg import TotalFluxPkg
from optlang import Variable
import logging

# Base class for FBA packages
class ProblemReplicationPkg(BaseFBAPkg):
Expand All @@ -22,12 +20,12 @@ def build_package(self, parameters):
shared_var_hash = {}
for pkg in self.parameters["shared_variable_packages"]:
fbapkg = self.modelutl.pkgmgr.getpkg(pkg)
for type in self.parameters["shared_variable_packages"][pkg]:
if type in fbapkg.variables:
for objid in fbapkg.variables[type]:
for obj_type in self.parameters["shared_variable_packages"][pkg]:
if obj_type in pkg.variables:
for objid in pkg.variables[obj_type]:
shared_var_hash[
fbapkg.variables[type][objid].name
] = fbapkg.variables[type][objid]
pkg.variables[obj_type][objid].name
] = pkg.variables[obj_type][objid]
# Now copying over variables and constraints from other models and replacing shared variables
count = 0
for othermdl in self.parameters["models"]:
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