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fix(sessions): an unreadable sessions.json is not an empty one (#279) - #538

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codex/p1-279-protect-sessions-registry
Sep 3, 2026
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fix(sessions): an unreadable sessions.json is not an empty one (#279)#538
lionello merged 2 commits into
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codex/p1-279-protect-sessions-registry

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Closes #279.

The symptom

Both halves of the box read "cannot parse" as "there are no sessions".

The web half acted on it. read_sessions returned {} on any
OSError/ValueError, and all three settings-daemon mutation routes wrote
that back plus their own edit. One click on Add session republished the
registry with a SINGLE entry: every other session delisted for good, with its
hasRun, boxSessionId and stopped gone. Running panes survived as
unmanaged tmux sessions nothing respawns, and re-adding a name started a fresh
conversation.

Reproduced against the shipped daemon (tests/golden/.../agent-box-settings)
before touching anything. A registry holding claude (with hasRun and a
boxSessionId) and codex, with a line of garbage appended, plus one POST to
/sessions/add:

AFTER: {"version": 1, "sessions": {"shell": {...}}}

The supervisor could not repair it. supervisor.sh sent jq's error to
/dev/null, so the reconcile loop iterated over nothing, logged nothing and
left the unit active (running) -- a box that looks idle. And
registry_ensure re-seeds only a MISSING OR EMPTY file, which a corrupt one is
neither.

Worth naming, because it is why this hid so well: bare jq reads a stream of
values, so {...}\nnot json parses far enough to yield the first document's
session names (the loop printed claude and then exited 5) while python's
json.load refuses the same file outright. The two halves did not even agree
on which files were broken.

The fix

  • load_sessions() distinguishes "unreadable" from "no sessions" and
    raises RegistryUnreadable. Add, delete and restart refuse on it, write one
    line to the journal, and put a banner in front of the operator instead of
    rewriting the file. A MISSING registry is still a first boot, so an add on a
    box that has never had one still creates it.
  • read_sessions() still answers {} for the read-only paths. A page that
    renders an empty list beats a 500 on every route that mentions a session, and
    the empty list is now transient.
  • registry_selfheal() joins the shared write protocol in
    modules/src/lib/registry.sh. The supervisor calls it at startup and on
    every tick, so a registry that does not parse is moved aside as
    sessions.json.corrupt-<ts> (kept, never deleted -- it is the only record of
    what the operator asked for) and re-seeded, with one journal line naming the
    file. It re-checks under the lock, because every writer publishes by rename
    and quarantining a document that landed mid-check would throw away a good
    registry. A read-only home warns once per transition, not every two seconds.
    Its jq check is -s (slurped) precisely so the two halves agree on what
    "corrupt" means.
  • write_sessions preserves an unknown version rather than stamping 1
    over a document a newer box wrote, and load_sessions keeps an entry whose
    value is not an object rather than silently dropping it into a write that
    would delete it.

User-visible and security effects

  • The Add session / Delete / Start buttons can now answer with a refusal
    banner: "The session list could not be read, so nothing was changed. The box
    moves the unreadable file aside and rebuilds the list within a few seconds --
    reload this page and try again."
    Carried on the existing ok= channel, like
    webhook_kept. An operator here has no shell, so the page has to say both
    that nothing changed and that the box repairs itself.
  • A box whose registry is corrupt now comes back on its own, to the
    declared seed. Sessions added at runtime that were only in the corrupt
    file are not restored automatically -- the quarantined file is what they can
    be read back from. Losing them to a fresh start is worse than losing none,
    and better than a box that silently runs nothing.
  • One extra jq per 2s supervisor tick. No new file, socket, privilege or
    sudo grant; the quarantined file is written by the same user, in the same
    directory, and the registry is re-created 0600 as before.
  • No AWS cost, IAM, networking or migration impact.

Checks run

Native, on this aarch64 box:

nix run .#assemble                                          (module regenerated)
nix run .#update-golden                                     (fixture regenerated)
nix build -L .#checks.aarch64-linux.sessions-registry        PASS  (new)
                                    registry-protocol        PASS
                                    module-generated-up-to-date PASS
                                    golden-snapshot          PASS
                                    assemble-module-escaping PASS
                                    backend-parity           PASS
                                    one-spec-both-backends   PASS
                                    profile-panel            PASS
                                    webhook-panel-state      PASS
                                    multi-user               PASS
                                    module-single-file       PASS
                                    vendor-integrity         PASS
                                    checkout-bootstrap       PASS
                                    source-tree              PASS
                                    checkout-options         PASS
                                    download-route           PASS
                                    webhook-route            PASS
python3 tests/test-registry.py                               OK (32 tests)
python3 tests/test-sessions-registry.py                      OK (9 tests)

The VM checks are x86_64-linux-only, so tests/sessions.nix (the new
self-heal subtest) and testscript-fits run in CI, not here.

Coverage added

  • tests/test-sessions-registry.py (new flake check sessions-registry,
    same shape and same subject as profile-panel): the three mutation routes
    driven over HTTP against the golden payload, each against five ways the file
    can break; the banner; version preservation; a non-object entry surviving a
    write; and the negative control that a healthy registry is still added to,
    deleted from and started.
  • tests/test-registry.py: quarantine-and-reseed, trailing garbage, two
    documents (valid to jq, fatal to python), the .sessions-as-a-list shape
    from Two native-backend bugs from the live Lightsail launch have NixOS-side twins (#154 Phase 5) #356, a healthy tick touching nothing and saying nothing, a first boot
    with no directory, an unwritable directory warning once across three calls,
    and a heal that waits for a writer holding the lock and then finds the
    document it published.
  • tests/sessions.nix: corrupt the registry on a live box with the unit left
    running, and assert the declared session comes back on its own, the bad file
    is kept, and the journal names it. Last in that file, deliberately: healing
    re-seeds the declared set.

🤖 Generated with Claude Code

https://claude.ai/code/session_01YZxFZERYWS1ynz9T8HnnPa

Both halves of the box read "cannot parse" as "there are no sessions".

`read_sessions` returned `{}` on any OSError/ValueError, and all three
settings-daemon mutation routes wrote that back plus their own edit. One
click on "Add session" therefore republished the registry with a SINGLE
entry: every other session delisted for good, with its `hasRun`,
`boxSessionId` and `stopped` gone. Running panes survived as unmanaged tmux
sessions nothing respawns, and re-adding a name started a fresh
conversation. Reproduced against the shipped daemon before the fix.

The supervisor could not repair it either: the reconcile loop sent jq's
error to /dev/null, so it iterated over nothing, logged nothing and left
the unit `active (running)` -- a box that looks idle -- and
`registry_ensure` re-seeds only a MISSING OR EMPTY file, which a corrupt
one is neither.

- `load_sessions()` distinguishes the two and raises `RegistryUnreadable`;
  add, delete and restart refuse on it, say so in the journal, and put a
  banner in front of the operator instead of rewriting the file. A MISSING
  registry is still a first boot, and `read_sessions()` still answers `{}`
  for the read-only paths, so a corrupt file renders an empty list rather
  than a 500 on every route that mentions a session.
- `registry_selfheal()` joins the shared write protocol: the supervisor
  calls it at startup and on every tick, so a registry that does not parse
  is moved aside as `sessions.json.corrupt-<ts>` (kept, never deleted) and
  re-seeded, with one journal line naming the file. A read-only home warns
  once per transition rather than every two seconds.
- Its jq check is `-s` (slurped) so it agrees with the daemon's
  `json.load`: bare jq reads a STREAM, so a registry with garbage appended
  yielded the first document's session names to the loop while python
  refused the same file outright.
- `write_sessions` preserves an unknown `version` instead of stamping 1
  over a document a newer box wrote, and `load_sessions` keeps an entry
  whose value is not an object rather than silently dropping it into a
  write that would delete it.

Coverage, natively on every architecture plus one VM assertion:
- `tests/test-sessions-registry.py` (new check `sessions-registry`): the
  three routes against five ways the file can break, the banner, the
  version, and the negative control that a healthy registry still works.
- `tests/test-registry.py`: quarantine-and-reseed, trailing garbage, two
  documents, the `.sessions`-as-a-list shape from #356, a healthy tick
  touching nothing, first boot with no directory, an unwritable directory
  warning once, and a heal waiting for a writer that holds the lock.
- `tests/sessions.nix`: corrupt the registry on a live box and assert the
  declared session comes back on its own, the bad file is kept and the
  journal names it.

Fixes #279

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01YZxFZERYWS1ynz9T8HnnPa
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📝 Walkthrough

Walkthrough

The change adds strict session registry validation, supervisor self-healing, version-preserving mutation routes, visible refusal handling, generated payload updates, integration tests, and a native Nix check.

Changes

Session registry integrity

Layer / File(s) Summary
Registry validation and supervisor self-healing
modules/src/lib/registry.sh, modules/src/supervisor.sh, modules/agent-box.nix, tests/golden/{vm,web}/payloads/...
Supervisors reject malformed registries, quarantine corrupt files under lock, reseed them, and retry healing during startup and reconciliation.
Version-preserving session mutations
modules/src/settings-daemon.py, modules/agent-box.nix, tests/golden/web/payloads/agent-box-settings/...
Registry loading distinguishes missing and unreadable files. Add, delete, and restart routes preserve versions and raw entries, or refuse writes with a visible status when the registry is unreadable.
Registry behavior validation and native check
tests/test-registry.py, tests/test-sessions-registry.py, tests/sessions.nix, flake.nix
Tests cover corruption recovery, concurrent writers, live reconciliation, HTTP mutation routes, version preservation, and missing registries. The native check runs the HTTP regression suite.

Estimated code review effort: 4 (Complex) | ~45 minutes

Merge Risk: 🟡 Moderate · up to bf37a

Concurrent registry activity during recovery can leave declared sessions unseeded. Keep the lock through reseeding before merging.

Sequence Diagram(s)

sequenceDiagram
  participant agent-box-supervisor
  participant sessions.json
  participant registry_selfheal
  participant settings-daemon
  agent-box-supervisor->>registry_selfheal: Validate registry
  registry_selfheal->>sessions.json: Lock and revalidate
  registry_selfheal->>sessions.json: Quarantine and reseed corrupt file
  settings-daemon->>sessions.json: Load registry for mutation
  settings-daemon->>settings-daemon: Refuse mutation if unreadable
  settings-daemon->>sessions.json: Write preserved version and entries
Loading

Suggested reviewers: lionello, claude

🚥 Pre-merge checks | ✅ 4 | ❌ 1

❌ Failed checks (1 warning)

Check name Status Explanation Resolution
Docstring Coverage ⚠️ Warning Docstring coverage is 42.22% which is insufficient. The required threshold is 80.00%. Docstring coverage is scoped to functions touched by this diff. Analyzed 45 functions across 5 files. (9 skipped: … Write docstrings for the functions missing them to satisfy the coverage threshold.
✅ Passed checks (4 passed)
Check name Status Explanation
Title check ✅ Passed The title clearly identifies the primary change: unreadable sessions.json files are no longer treated as empty registries.
Description check ✅ Passed The description directly explains the registry corruption problem, the mutation and supervisor fixes, user-visible behavior, and test coverage.
Linked Issues check ✅ Passed The changes satisfy issue #279 by refusing mutations on unreadable registries, showing an operator banner, detecting and logging corruption, quarantining and reseeding corrupt files, preserving versio…
Out of Scope Changes check ✅ Passed The changes remain within the linked issue scope. The added implementation, generated payloads, tests, and flake check support registry validation, safe mutation, self-healing, and regression coverage…
Full details: Linked Issues check

Explanation

The changes satisfy issue #279 by refusing mutations on unreadable registries, showing an operator banner, detecting and logging corruption, quarantining and reseeding corrupt files, preserving versions and entries, and adding coverage for these behaviors.

Full details: Out of Scope Changes check

Explanation

The changes remain within the linked issue scope. The added implementation, generated payloads, tests, and flake check support registry validation, safe mutation, self-healing, and regression coverage.

Full details: Docstring Coverage

Explanation

Docstring coverage is 42.22% which is insufficient. The required threshold is 80.00%. Docstring coverage is scoped to functions touched by this diff. Analyzed 45 functions across 5 files. (9 skipped: 9 unsupported.)

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Actionable comments posted: 1

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Inline comments:
In
`@tests/golden/web/payloads/agent-box-webhook-spawn/bin/agent-box-webhook-spawn`:
- Around line 299-301: Update registry_selfheal in registry.sh to retain the
outer registry lock through the registry_ensure call, removing the unlock before
re-seeding while preserving nested _registry_depth deadlock handling. Regenerate
the affected payloads after applying the change.

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📒 Files selected for processing (14)
  • flake.nix
  • modules/agent-box.nix
  • modules/src/lib/registry.sh
  • modules/src/settings-daemon.py
  • modules/src/supervisor.sh
  • tests/golden/vm/payloads/agent-box-agent-mark-stopped
  • tests/golden/vm/payloads/agent-box-session/bin/agent-box-session
  • tests/golden/vm/payloads/agent-box-supervisor/bin/agent-box-supervisor
  • tests/golden/web/payloads/agent-box-robot-mark-stopped
  • tests/golden/web/payloads/agent-box-settings/bin/agent-box-settings
  • tests/golden/web/payloads/agent-box-webhook-spawn/bin/agent-box-webhook-spawn
  • tests/sessions.nix
  • tests/test-registry.py
  • tests/test-sessions-registry.py

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Comment thread tests/golden/web/payloads/agent-box-webhook-spawn/bin/agent-box-webhook-spawn Outdated
Two follow-ups on the same change.

registry_selfheal released the lock between moving the unreadable file
aside and calling registry_ensure. In that gap `agent-box-session add` can
create the registry, and registry_ensure never clobbers a file that exists
-- so the declared sessions would stay unseeded on that boot and every
later one, which is the outcome the function exists to prevent. The two
steps are now one critical section; the lock nests, so registry_ensure
taking it again does not deadlock. Reported by CodeRabbit on #538.

The new test asks the library directly, standing in for registry_ensure and
reading REGISTRY_HELD/_registry_depth at the call: timing a window that
small from outside would prove nothing on a loaded runner. Verified against
the pre-fix shape, which reports held=0 depth=0.

And the VM subtest named a local `log`, which the test driver already binds
to its own AbstractLogger -- the driver's type check refuses the shadowing
at BUILD time, before any VM boots, and that is the only thing that failed
CI on bf37a2a. Renamed to `journal`. The kill that goes with it is now
tolerant: main can be the last session left by that point in the file, and
killing the last one ends the tmux server, which tmux may report back as a
failure.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01YZxFZERYWS1ynz9T8HnnPa
@defangdevs
defangdevs dismissed coderabbitai[bot]’s stale review September 3, 2026 02:37

addressed in 9f17969 (lock now held across quarantine + re-seed, with a regression test)

@lionello
lionello merged commit 5359318 into master Sep 3, 2026
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@lionello
lionello deleted the codex/p1-279-protect-sessions-registry branch September 3, 2026 15:01
@github-project-automation github-project-automation Bot moved this from Backlog to Done in Agent-Box Sep 3, 2026
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An unparseable sessions.json silently delists every session, and one web click makes it permanent

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