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Name		Name	Last commit message	Last commit date
Latest commit   History 40 Commits 40 Commits
encode		encode
geo/1.id_transfer		geo/1.id_transfer
recycle_bin		recycle_bin
ATACseqQC_saturation.R		ATACseqQC_saturation.R
ATACseqQC_saturation.sh		ATACseqQC_saturation.sh
Frip.R		Frip.R
PBC.R		PBC.R
bed2bam		bed2bam
bismark_norm_dat		bismark_norm_dat
bismark_plot_m_bias		bismark_plot_m_bias
bismark_plot_mbias.R		bismark_plot_mbias.R
chromHMM_compareModels.R		chromHMM_compareModels.R
chromHMM_transfer_200bs_bed.sh		chromHMM_transfer_200bs_bed.sh
chromhmm_format_as_ideas		chromhmm_format_as_ideas
chromhmm_merge_as_ideas		chromhmm_merge_as_ideas
chromhmm_modify_loc.sh		chromhmm_modify_loc.sh
chromhmm_run_ideas_format.sh		chromhmm_run_ideas_format.sh
cp_scripts		cp_scripts
deeptools_corNPZ_changenames		deeptools_corNPZ_changenames
deeptools_corNPZ_changenames.py		deeptools_corNPZ_changenames.py
deeptools_corNPZ_merge		deeptools_corNPZ_merge
deeptools_corNPZ_merge.py		deeptools_corNPZ_merge.py
deeptools_corNPZ_shape		deeptools_corNPZ_shape
deeptools_corNPZ_shape.py		deeptools_corNPZ_shape.py
deeptools_corNPZ_shownames		deeptools_corNPZ_shownames
deeptools_corNPZ_shownames.py		deeptools_corNPZ_shownames.py
deeptools_corNPZ_split		deeptools_corNPZ_split
deeptools_corNPZ_split.py		deeptools_corNPZ_split.py
deeptools_corTAB_merge		deeptools_corTAB_merge
deeptools_corTAB_merge.py		deeptools_corTAB_merge.py
deeptools_corTAB_split		deeptools_corTAB_split
deeptools_corTAB_split.R		deeptools_corTAB_split.R
deeptools_plotcorrelation		deeptools_plotcorrelation
deeptools_plotcorrelation.R		deeptools_plotcorrelation.R
deeptools_plotcorrelation_by_rawMatrix.R		deeptools_plotcorrelation_by_rawMatrix.R
deeptools_plotprofile		deeptools_plotprofile
deeptools_plotprofile.R		deeptools_plotprofile.R
deeptools_plotprofile.R0		deeptools_plotprofile.R0
deeptools_plotprofile_color_by_group.R		deeptools_plotprofile_color_by_group.R
deeptools_plotprofile_multiple_data.R		deeptools_plotprofile_multiple_data.R
deeptools_replicated_data_selection_enrichment_and_depth.R		deeptools_replicated_data_selection_enrichment_and_depth.R
deeptools_replicated_data_selection_enrichment_and_depth.R1		deeptools_replicated_data_selection_enrichment_and_depth.R1
deeptools_replot_depth_enrich_summary		deeptools_replot_depth_enrich_summary
deeptools_replot_depth_enrich_summary.R		deeptools_replot_depth_enrich_summary.R
deeptools_sep_deeptools_sig_matrix		deeptools_sep_deeptools_sig_matrix
encodeDownload		encodeDownload
encodeMergedat		encodeMergedat
fastq2fq		fastq2fq
geo_download		geo_download
geo_meta		geo_meta
geo_soft_link		geo_soft_link
getFull_dir		getFull_dir
getFull_file		getFull_file
get_phred		get_phred
get_phred_backup.sh		get_phred_backup.sh
ideas_bedgraph2bw		ideas_bedgraph2bw
ideas_bedgraph2bw_list		ideas_bedgraph2bw_list
ideas_bedgraph2standardBedgraph		ideas_bedgraph2standardBedgraph
ideas_bw2bedgraph		ideas_bw2bedgraph
ideas_get_fail_run.sh		ideas_get_fail_run.sh
ideas_get_mean_signal_track		ideas_get_mean_signal_track
ideas_get_mean_signal_track.R		ideas_get_mean_signal_track.R
ideas_get_peaks.R		ideas_get_peaks.R
ideas_get_representative.R		ideas_get_representative.R
ideas_grediently_remove_1_prepare_meta_script.sh		ideas_grediently_remove_1_prepare_meta_script.sh
ideas_grediently_remove_2_run_parallelly_script_prepare.sh		ideas_grediently_remove_2_run_parallelly_script_prepare.sh
ideas_grediently_remove_3_keep_run.sh		ideas_grediently_remove_3_keep_run.sh
ideas_grediently_remove_4_soft_link_for_raw_IDEAS_results.sh		ideas_grediently_remove_4_soft_link_for_raw_IDEAS_results.sh
ideas_grediently_remove_5_multi_vs_27multi_ARI.sh		ideas_grediently_remove_5_multi_vs_27multi_ARI.sh
ideas_integrate_nmi_ari.R		ideas_integrate_nmi_ari.R
ideas_most_correlated_state_merge.R		ideas_most_correlated_state_merge.R
ideas_multi_vs_multi_plot_boxplot.R		ideas_multi_vs_multi_plot_boxplot.R
ideas_nmi.R		ideas_nmi.R
ideas_overall_across_cell_tendency.R		ideas_overall_across_cell_tendency.R
ideas_overall_tendency.R		ideas_overall_tendency.R
ideas_parallel_run.sh		ideas_parallel_run.sh
ideas_peak_number.R		ideas_peak_number.R
ideas_pk_overlap.R		ideas_pk_overlap.R
ideas_prepare_metadata.R		ideas_prepare_metadata.R
ideas_qsub.sh		ideas_qsub.sh
ideas_rand_index_1vs1.R		ideas_rand_index_1vs1.R
ideas_rand_index_1vsList.R		ideas_rand_index_1vsList.R
ideas_rand_index_ListvsList.R		ideas_rand_index_ListvsList.R
ideas_rand_index_between_each_other_within_internal.R		ideas_rand_index_between_each_other_within_internal.R
ideas_reproducibility.R		ideas_reproducibility.R
ideas_rm_fail_run.sh		ideas_rm_fail_run.sh
ideas_run.sh		ideas_run.sh
ideas_sankey_prepare		ideas_sankey_prepare
ideas_signal2bedgraph2bw		ideas_signal2bedgraph2bw
ideas_state_comparison_missing_Type.R		ideas_state_comparison_missing_Type.R
ideas_state_comparison_missing_Type.R1		ideas_state_comparison_missing_Type.R1
ideas_states_corresponding_statistics.sh		ideas_states_corresponding_statistics.sh
intersect		intersect
keep_run		keep_run
killallprocess		killallprocess
liftover_custom		liftover_custom
lswc		lswc
macs2_muiltiple_results_overlap.R		macs2_muiltiple_results_overlap.R
md5sum_dir		md5sum_dir
modify		modify
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