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Software
Filippo Biscarini edited this page May 1, 2020
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The whole work-flow will rely on the following software:
- Plink (Purcell et al., 2007) for data manipulation and basic descriptive stats
- Beagle (Browning & Browning, 2016) for the imputation of missing genotypes (LHCI: localized haplotype clustering imputation)
- R (R Core Team, 2017)): for the injection of artificial missing genotypes and the parsing of results (including measuring imputation accuracy)