HPG-Hmapper Version 1.63

coverage range issue solved

HPG-Hmapper Version 1.62

little alignment improved

HPG-Hmapper Version 1.61

memory allocation bug fixed

HPG-Hmapper Version 1.6

improvements in alignment accuracy

HPG-Hmapper Version 1.5

The information in the output files is improved by separating the mapping of unmethylated Cs from non-hydroxymethylated Cs. Same with nonC.

HPG-Hmapper Version 1.4

The methylation_map_mix_<chromosome_number>.csv is added as a new output files in addition to forward and reverse files.
With these mix files, a posterior mix of forward and reverse files is not needed and more accurate information is managed.
In version 1.3, the individual positions under the minimum coverage were filtered before the forward and reverse output files were saved.
Now, forward and reverse counts are mixed into the hpg-hmapper tool, discovering new positions with minimal coverage or higher.

HPG-Hmapper Version 1.3

This version add a new option to filter the output files by minimum coverage.
By default, minimum coverage is fixed at 15, but it is possible to set a new coverage adding '--coverage ' to the command line
An issue with the number of threads selection is solved

HPG-Hmapper Version 1.2

Fix an issue in the counters

Add a map_no_hmc.bam file for mapping without hmc analisys

HPG-Hmapper Version 1.1

• Added minimum quality cutoff (BAM QUAL field) for the input sequences files.

HPG-Hmapper 1.0

First release of HPG-Hmapper.