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Pull requests: iqtree/iqtree3
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Error out when a partition model is combined with -fs/-ft instead of silently ignoring them
#208
opened Sep 5, 2026 by
ssolo
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Fix setRootNode() assertion when the -o outgroup is absent from a partition tree or a quartet tree (#203, #89)
#207
opened Sep 4, 2026 by
cindykrafft
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2
Fix submodel indexing logic in ModelMarkov functions, fix likelihood calculations in AlignmentPairwise
#194
opened Jul 29, 2026 by
StefanFlaumberg
Contributor
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Mixlen refactoring: Remove dependency on ModelFactoryMixlen and cppoptlib, add support for the -ft option
#182
opened Jul 7, 2026 by
StefanFlaumberg
Contributor
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Introduce --site(-float)-weights options and implement Bayesian Bootstrap
#157
opened May 5, 2026 by
trongnhanuit
Member
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