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HPCing
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HPCing
51 followers · 36 following

Achievements

Achievement: Pull Sharkx2Achievement: QuickdrawAchievement: Pair ExtraordinaireAchievement: StarstruckAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pull Sharkx2Achievement: QuickdrawAchievement: Pair ExtraordinaireAchievement: StarstruckAchievement: Arctic Code Vault Contributor

Organizations

@HCEMM

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iquasere/README.md

Hi there! 👋

I was a PhD student, using bioinformatics to "Uncover the role of conductive nanomaterials in anaerobic digestion".

Tools for meta-omics analyses

My work has mostly been the development of tools for analyses of meta-omics data, i.e., the study of the collective genomes, transcriptomes or proteomes of a microbial community.

These are the main tools I have developed for meta-omics analyses:

UPIMAPI, reCOGnizer and KEGGCharter

UPIMAPI, reCOGnizer and KEGGCharter are tools developed for the analyses of omics data, and optimized for handling the challenges of meta-omics.

MOSCA

MOSCA is a powerful pipeline developed for metagenomics (MG), metatranscriptomics (MT) and metaproteomics (MP) integrated analyses.

Finally, some metrics about my coding routine:

Code Time

I'm an Early 🐤

🌞 Morning                1692 commits        ██████░░░░░░░░░░░░░░░░░░░   23.39 % 
🌆 Daytime                3817 commits        █████████████░░░░░░░░░░░░   52.76 % 
🌃 Evening                1366 commits        █████░░░░░░░░░░░░░░░░░░░░   18.88 % 
🌙 Night                  360 commits         █░░░░░░░░░░░░░░░░░░░░░░░░   04.98 %

📅 I'm Most Productive on Wednesday

Monday                   1296 commits        ████░░░░░░░░░░░░░░░░░░░░░   17.91 % 
Tuesday                  1648 commits        ██████░░░░░░░░░░░░░░░░░░░   22.78 % 
Wednesday                1787 commits        ██████░░░░░░░░░░░░░░░░░░░   24.70 % 
Thursday                 1034 commits        ████░░░░░░░░░░░░░░░░░░░░░   14.29 % 
Friday                   980 commits         ███░░░░░░░░░░░░░░░░░░░░░░   13.55 % 
Saturday                 57 commits          ░░░░░░░░░░░░░░░░░░░░░░░░░   00.79 % 
Sunday                   433 commits         █░░░░░░░░░░░░░░░░░░░░░░░░   05.98 %

📊 This Week I Spent My Time On

💬 Programming Languages: 
Markdown                 4 hrs 32 mins       ████████████░░░░░░░░░░░░░   47.65 % 
Nextflow                 1 hr 44 mins        █████░░░░░░░░░░░░░░░░░░░░   18.20 % 
Other                    1 hr 30 mins        ████░░░░░░░░░░░░░░░░░░░░░   15.88 % 
YAML                     50 mins             ██░░░░░░░░░░░░░░░░░░░░░░░   08.80 % 
Bash                     31 mins             █░░░░░░░░░░░░░░░░░░░░░░░░   05.44 % 

🐱‍💻 Projects: 
acceleration-toolbox     6 hrs 4 mins        ████████████████░░░░░░░░░   63.75 % 
rnaseq-nextflow          3 hrs 9 mins        ████████░░░░░░░░░░░░░░░░░   33.25 % 
Unknown Project          9 mins              ░░░░░░░░░░░░░░░░░░░░░░░░░   01.63 % 
ansible-puli             7 mins              ░░░░░░░░░░░░░░░░░░░░░░░░░   01.37 %

I Mostly Code in Python

Python                   13 repos            ████████░░░░░░░░░░░░░░░░░   33.33 % 
HTML                     10 repos            ██████░░░░░░░░░░░░░░░░░░░   25.64 % 
Java                     4 repos             ███░░░░░░░░░░░░░░░░░░░░░░   10.26 % 
Shell                    2 repos             █░░░░░░░░░░░░░░░░░░░░░░░░   05.13 % 
JavaScript               1 repo              █░░░░░░░░░░░░░░░░░░░░░░░░   02.56 %

Last Updated on 10/07/2026 20:12:05 UTC

Pinned Loading

  1. reCOGnizer reCOGnizer Public

    A tool for domain based annotation with databases from the Conserved Domains Database

    HTML 30 3

  2. UPIMAPI UPIMAPI Public

    UniProt Id Mapping through API

    Python 40 4

  3. KEGGCharter KEGGCharter Public

    A tool for representing genomic potential and transcriptomic expression into KEGG pathways

    Python 63 7

  4. MOSCA MOSCA Public

    Meta-Omics Software for Community Analysis

    Python 37 7

  5. annotation_paper annotation_paper Public

    UPIMAPI, reCOGnizer and KEGGCharter: bioinformatics tools for fast functional annotation and visualization of (meta)-omics datasets

    Python 4

  6. MOSGUITO MOSGUITO Public

    MOSca's GUI TO perform meta-omics analyses

    HTML 2 2