Skip to content
Open
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Binary file modified public/portal-thumbs/asma.webp
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified public/portal-thumbs/diaspora.webp
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified public/portal-thumbs/enigma-strata.webp
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified public/portal-thumbs/function-junction.webp
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified public/portal-thumbs/fungal-jungle.webp
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified public/portal-thumbs/genknown.webp
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified public/portal-thumbs/plant-terra.webp
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
97 changes: 57 additions & 40 deletions src/routes/portals.tsx
Original file line number Diff line number Diff line change
Expand Up @@ -189,8 +189,8 @@ const DECLARED: readonly Portal[] = [
'NMDC',
'SPIRE / GBIF',
],
version: 'v0.2.0',
updated: '2026-08-21',
version: 'v0.3.0',
updated: '2026-08-31',
},
{
slug: 'genknown',
Expand All @@ -216,8 +216,9 @@ const DECLARED: readonly Portal[] = [
'NMDC',
'GOLD',
],
version: 'v0.1.3',
updated: '2026-08-21',
// The deployed portal prints no version, so this is the newest tag.
version: 'v0.1.7',
updated: '2026-09-07',
},
{
slug: 'fungal-jungle',
Expand All @@ -227,29 +228,31 @@ const DECLARED: readonly Portal[] = [
section: 'kbase',
facets: [FACETS.genomes, FACETS.ecology, FACETS.proteins],
topics: ['Fungi', 'CAZymes', 'Structure'],
// src/fungal_jungle/sources.py
sources: [
'Ensembl Fungi',
'JGI MycoCosm',
'SGD',
'PomBase',
'CGD',
'NCBI Datasets / Taxonomy',
'GBIF backbone',
'Ensembl Fungi',
'GBIF',
'CAZy',
'dbCAN',
'MEROPS',
'TCDB',
'UniProt',
'InterPro',
'AlphaFold DB',
'FUNGuild',
'MIBiG',
'antiSMASH-DB',
'FunGuild',
'AlphaFold DB',
'UniProt',
'WorldClim v2',
'SoilGrids',
'Fungal Fitness Browser (RB-TnSeq)',
'Yeast HIP-HOP chemical genomics',
'SGD',
'PomBase',
'CGD',
'NCBI Datasets / Taxonomy',
],
version: 'v0.6.0',
updated: '2026-08-21',
version: 'v0.7.5',
updated: '2026-09-01',
},
{
slug: 'plant-terra',
Expand All @@ -275,8 +278,8 @@ const DECLARED: readonly Portal[] = [
'SSURGO',
'GBIF',
],
version: 'v0.2.2',
updated: '2026-08-25',
version: 'v0.2.3',
updated: '2026-08-29',
},
{
slug: 'diaspora',
Expand All @@ -286,23 +289,33 @@ const DECLARED: readonly Portal[] = [
section: 'kbase',
facets: [FACETS.ecology, FACETS.environment],
topics: ['Metagenomics', 'Biogeography', 'Pangenomes'],
// src/diaspora/attribution.py
sources: [
'NMDC',
'NEON',
'EMP',
'GROWdb (USGS)',
'PlanetMicrobe',
'agmicrobiome',
'Tara Oceans',
'MGnify',
'SPIRE',
'SMAG',
'JGI-GEM',
'Tara Oceans',
'Microbe Atlas',
'KBase KE-pangenome',
'SMAG',
'GROW (USGS)',
'PlanetMicrobe',
'agmicrobiome',
'NEON (via NMDC)',
'GTDB',
'eggNOG',
'KEGG',
'NCBI Taxonomy / BioSample / SRA',
'ENVO',
'Microbial trait tables (Madin · BactoTraits · metaTraits · FAPROTAX)',
'EarthEnv',
'CHELSA',
'Copernicus GLO-30 DEM',
'Google Earth Engine rasters (ERA5 · NDVI/EVI · soil)',
],
version: 'v0.2.0',
updated: '2026-08-21',
version: 'v0.4.1',
updated: '2026-09-07',
},
{
slug: 'enigma-strata',
Expand All @@ -323,8 +336,9 @@ const DECLARED: readonly Portal[] = [
'Web of Microbes',
'NOAA GHCN-Daily',
],
version: 'v0.4.0',
updated: '2026-08-21',
// Behind a team-password gate (2026-09); the portal prints this inside it.
version: 'v0.5.0',
updated: '2026-08-31',
},
{
slug: 'pmi-understory',
Expand All @@ -351,9 +365,10 @@ const DECLARED: readonly Portal[] = [
'GapMind',
'NCBI Taxonomy / Datasets',
],
// The deployed portal prints no version, so this is the newest tag.
version: 'v0.2.2',
updated: '2026-08-26',
// Behind a team-password gate (2026-09); inside it the portal prints no
// version, so this is the newest tag.
version: 'v0.3.2',
updated: '2026-09-01',
},
{
slug: 'phagecast',
Expand All @@ -365,8 +380,10 @@ const DECLARED: readonly Portal[] = [
topics: ['Phage', 'Host range', 'Receptors'],
// No sources registry yet; these are from the README and docs/STORAGE.md.
sources: ['Phage Foundry (DOE BER)', 'GenomeDepot'],
version: 'v0.46.0',
updated: '2026-08-24',
// The deployed portal sits behind a team-password gate (2026-09), so its
// printed version is unreadable from outside; this is the newest tag.
version: 'v0.48.0',
updated: '2026-09-04',
},
{
slug: 'asma',
Expand All @@ -392,10 +409,10 @@ const DECLARED: readonly Portal[] = [
'KEGG BRITE',
'ModelSEED Biochemistry',
],
// The deployed portal prints no version, in its header or its footer, so
// this is the newest tag. release.yaml names v0.2.0, which is not tagged.
version: 'v0.1.0-review',
updated: '2026-09-02',
// Behind a team-password gate (2026-09); inside it the portal prints no
// version, so this is the newest tag.
version: 'v0.3.0',
updated: '2026-09-07',
},
{
// Repo and CLI are `ideas-portal`; the deployed path is /portals/ideas/.
Expand All @@ -410,8 +427,8 @@ const DECLARED: readonly Portal[] = [
sources: ['IDEAS program (Argonne)', 'PubChem', 'UniProt', 'RCSB PDB'],
// The deployed portal prints no app version (the "v1" it shows is the
// dataset's), so this is the newest tag.
version: 'v0.1.4',
updated: '2026-08-25',
version: 'v0.1.7',
updated: '2026-09-01',
},
];

Expand Down
Loading