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automap/updioenhancementNew feature or requestNew feature or requestStatus: Open.#341 In nf-cmgg/smallvariants;UPDio: Incorrect output file naming when --updio_regions is used
bugSomething isn't workingSomething isn't workingStatus: Open.#330 In nf-cmgg/smallvariants;UPDio generates only one result for families with multiple affected probands
bugSomething isn't workingSomething isn't workingStatus: Open.#329 In nf-cmgg/smallvariants;Make the pipeline more compatible with big families (or batches)
enhancementNew feature or requestNew feature or requestStatus: Open.#315 In nf-cmgg/smallvariants;DeepVariant variant caller
enhancementNew feature or requestNew feature or requestStatus: Open.#295 In nf-cmgg/smallvariants;gdb optimization
enhancementNew feature or requestNew feature or requestStatus: Open.#274 In nf-cmgg/smallvariants;evaluate
GLnexusfor joint variant callingenhancementNew feature or requestNew feature or requestStatus: Open.#263 In nf-cmgg/smallvariants;explore
reblockgvcfto further compress gvcf outputenhancementNew feature or requestNew feature or requestlow-priorityLow priority issues (Don't focus on these for the next release)Low priority issues (Don't focus on these for the next release)Status: Open.#260 In nf-cmgg/smallvariants;Benchmark vep annotation with/without ensembl-xs
enhancementNew feature or requestNew feature or requestStatus: Open.#254 In nf-cmgg/smallvariants;VEP: use bgzipped fasta reference
enhancementNew feature or requestNew feature or requestStatus: Open.#244 In nf-cmgg/smallvariants;Add somalier ancestry
enhancementNew feature or requestNew feature or requestlow-priorityLow priority issues (Don't focus on these for the next release)Low priority issues (Don't focus on these for the next release)Status: Open.#241 In nf-cmgg/smallvariants;GATK is slow, investigate alternatives to speed things up
enhancementNew feature or requestNew feature or requestlow-priorityLow priority issues (Don't focus on these for the next release)Low priority issues (Don't focus on these for the next release)Status: Open.#211 In nf-cmgg/smallvariants;