This repository was archived by the owner on Mar 12, 2026. It is now read-only.
This repository was archived by the owner on Mar 12, 2026. It is now read-only.
Support for ALT-aware mapping #11
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HPG Aligner has to take into account the ALT contigs: alternate haplotypes sequences for some chromosomes. The genome reference GRCh38 includes 261 ALT contigs, but this will become worse when more ALT contigs were added in the future.