TASK-2304 Update the alignment QC to remove the hybrid selection (HS) metrics analysis - #2190

Open

jtarraga wants to merge 78 commits into

release-2.4.xfrom

Commits on Nov 3, 2022

analysis: update mutational signature to biodata changes, #TASK-2242, #TASK-2243
jtarraga
committed
5d10e1b
analysis: generate CLI automatically, #TASK-2242, #TASK-2243
jtarraga
committed
5a58318

Commits on Nov 4, 2022

Commits on Nov 8, 2022

analysis: save mutational signature and fitting (as data model files) in the job dir, and generate CLI, #TASK-2242, #TASK-2243
jtarraga
committed
cf969cb
Merge branch 'release-2.4.x' into TASK-2242
jtarraga
committed
abd3897

Commits on Nov 9, 2022

Commits on Nov 10, 2022

app: set default fitting id to fitting-1, #TASK-2242
pfurio
committed
65edb26

Commits on Nov 11, 2022

Change version to 2.5.0-SNAPSHOT after merge v2.4.10
juanfeSanahuja
committed
c7c7859
Prepare release 2.5.0
juanfeSanahuja
committed
971883a
Prepare new development version 2.5.1-SNAPSHOT
juanfeSanahuja
committed
480deb4
Prepare new development version
juanfeSanahuja
committed
f7e22c0
Prepare 2.4.6-SNAPSHOT
juanfeSanahuja
committed
89bf7d3
Prepare 2.6.0-SNAPSHOT
juanfeSanahuja
committed
6be4b79
pom:Update java-common-libs and biodata versions
juanfeSanahuja
committed
43730b0

Commits on Nov 17, 2022

analysis: compute counts for SV, #TASK-2242, #TASK-2353
jtarraga
committed
0b1e035

Commits on Nov 18, 2022

analysis: generate the catalogue.tsv file for SV variants, and add junit test, #TASK-2242, #TASK-2353
jtarraga
committed
621def7

Commits on Nov 21, 2022

Commits on Nov 23, 2022

update version script
juanfeSanahuja
committed
20af5e1
update dependency script
juanfeSanahuja
committed
3eaaa52

Commits on Nov 24, 2022

Commits on Nov 25, 2022

Deleted update version script
juanfeSanahuja
committed
4dd5d18
Update java-common-libs dependency to 4.6.0-SNAPSHOT
juanfeSanahuja
committed
6c46c96

Commits on Nov 29, 2022

Commits on Nov 30, 2022

Commits on Dec 1, 2022

Commits on Dec 2, 2022

catalog: fix several tests, #TASK-2297
pfurio
committed
48b1812

Commits on Dec 5, 2022

catalog: fix all tests, #TASK-2297
pfurio
committed
1334675
analysis: fix some errors, #TASK-2242, #TASK-2353
jtarraga
committed
ebd586f
Merge branch 'TASK-2242' into TASK-2274
jtarraga
committed
fde1c46

Commits on Dec 12, 2022

Clean spaces
juanfeSanahuja
committed
3a986c0
Merge branch 'TASK-2390' of https://github.com/opencb/opencga into TASK-2390
juanfeSanahuja
committed
6ce48dd

Commits on Dec 13, 2022

Port Patch Version 1.2.11 #TASK-2474
juanfeSanahuja
committed
a564f12
Port Patch Version 1.2.10.1 #TASK-2475
juanfeSanahuja
committed
e59c6af

Commits on Dec 19, 2022

Merge and resolve conflicts, #TASK-2242
jtarraga
committed
beccef5
Resolve conflicts, #TASK-2274
jtarraga
committed
f18172b

Commits on Dec 22, 2022

Port Patch Version 1.2.12 #TASK-2525
juanfeSanahuja
committed
2c834d2

Commits on Dec 26, 2022

analysis: fix some bugs and improve junit test, #TASK-2274, #TASK-2369
jtarraga
committed
6189163

Commits on Dec 27, 2022

Merge pull request #2222 from opencb/TASK-2297
pfurio
authored
13fd25d
catalog: fix sample-individual association issue, #TASK-2539
pfurio
committed
74d985e

Commits on Jan 4, 2023

core: fix Junit test
imedina
committed
f960658
catalog: stop using old MongoClient, #TASK-2297
pfurio
committed
224c6e8
storage: remove opencga-storage-mongodb dependency, #TASK-2297
pfurio
committed
557f99f

Commits on Jan 5, 2023

Commits on Jan 6, 2023

storage: Use dataRelease when calling to cellbase. #TASK-2575
j-coll
committed
74397e7

Commits on Jan 9, 2023

Commits on Jan 10, 2023

JUnit minor fixes
imedina
committed
bc82ec4
Resolve conflicts after merging develop, #TASK-2303
jtarraga
committed
3621810