Repositories list

• RPi4_behavior_boxes

  Public
  code for the behavior boxes running on the Raspberry Pi 4

  Python

  •77 forks•88 stars•00 issues•22 pull requests•Updated Aug 27, 2026Aug 27, 2026

• neurokairos

  Public
  Plays IRIG and Unix timecodes on the GPIO pins of a Raspberry Pi 4B

  Python

  •

  MIT License

  •00 forks•44 stars•00 issues•00 pull requests•Updated Aug 22, 2026Aug 22, 2026

• RPi4_behavior_boxes_hardware

  Public
  Codex-based refactoring of the RPi behavior box hardware code

  Python

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated May 15, 2026May 15, 2026

• deOliveira_Kim_SleepV1_2026

  Public
  Github page for the code used in Sleep reveals dynamics integrating and segregating movement and stimulus representations in V1

  MATLAB

  •00 forks•11 star•00 issues•00 pull requests•Updated May 4, 2026May 4, 2026

• generalized_contrastive_PCA

  Public
  Method to find contrastive dimensions between experimental conditions

  neurosciencedimensionality-reductiondata-analysis+ 2

  neurosciencedimensionality-reductiondata-analysiscontrastiveomics-analysis

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •22 forks•2929 stars•00 issues•00 pull requests•Updated Mar 29, 2026Mar 29, 2026

• Miniscope-DAQ-Cypress-firmware

  Public
  DAQ firmware for V3 and V4 Miniscope platforms

  C

  •1111 forks•00 stars•00 issues•00 pull requests•Updated Mar 19, 2026Mar 19, 2026

• RPi4_behavior_tasks

  Public
  behavioral tasks for the RPi4 behavior boxes

  Python

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Mar 11, 2026Mar 11, 2026

• phy

  Public
  phy: interactive visualization and manual spike sorting of large-scale ephys data

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •187187 forks•00 stars•00 issues•00 pull requests•Updated Feb 24, 2026Feb 24, 2026

• neurokairos-pynapple

  Public
  Uses IRIG timecodes to synchronize pynapple objects to UTC time signals from GPS satellites

  Python

  •00 forks•11 star•00 issues•00 pull requests•Updated Feb 20, 2026Feb 20, 2026

• pynacollada

  Public
  pynapple collaborative data analysis (high level python scripts) :tropical_drink:

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •1515 forks•00 stars•00 issues•00 pull requests•Updated Feb 20, 2026Feb 20, 2026

• pynapple

  Public
  PYthon Neural Analysis Package :pineapple:

  Python

  •

  MIT License

  •8080 forks•00 stars•00 issues•00 pull requests•Updated Feb 17, 2026Feb 17, 2026

• Miniscope-v4

  Public
  All things Miniscope v4

  Prolog

  •

  GNU General Public License v3.0

  •3434 forks•00 stars•00 issues•00 pull requests•Updated Feb 14, 2026Feb 14, 2026

• RPi4Cam

  Public
  A highly flexible, scalable, video recording system for behavioral neuroscience with RPi4B, PiCam2, LAN

  Python

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Sep 19, 2025Sep 19, 2025

• analog_SWR_detection

  Public
  GNU General Public License v3.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Jan 24, 2025Jan 24, 2025

• methods_class

  Public
  "Approaches to Study Neural Circuits" course

  MATLAB

  •1010 forks•6868 stars•00 issues•00 pull requests•Updated Dec 13, 2024Dec 13, 2024

• Sucrose_Self-Administration

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated May 5, 2024May 5, 2024

• fast_CCG

  Public
  This is a Python program for calculating cross-correlograms quickly using compiled C code

  C

  •00 forks•00 stars•11 issue•00 pull requests•Updated Jul 2, 2023Jul 2, 2023

• open_field_DLC_analysis

  Public
  MATLAB

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 20, 2023Mar 20, 2023

• auto_scripts

  Public
  scripts for automating data preprocessing

  Shell

  •11 fork•33 stars•00 issues•00 pull requests•Updated Jan 14, 2022Jan 14, 2022

• rpg

  Public
  C

  •77 forks•00 stars•00 issues•00 pull requests•Updated Jan 27, 2021Jan 27, 2021

• behavior_box

  Public
  Matlab and arduino code for our mouse behavior boxes

  MATLAB

  •00 forks•22 stars•00 issues•00 pull requests•Updated Jan 23, 2021Jan 23, 2021

• autopilot

  Public
  Distributed behavioral experiments

  Python

  •

  Mozilla Public License 2.0

  •2525 forks•11 star•00 issues•00 pull requests•Updated Dec 1, 2020Dec 1, 2020

• Kilosort2Wrapper

  Public
  MATLAB

  •

  GNU General Public License v3.0

  •33 forks•44 stars•00 issues•00 pull requests•Updated Mar 9, 2020Mar 9, 2020

• 3D_printed_syringe_pump

  Public
  plans for our 3D printed syringe pump design

  00 forks•00 stars•00 issues•00 pull requests•Updated Mar 18, 2019Mar 18, 2019

• intan_neurosuite

  Public
  A modified version of the Intan data acquisition software that is compatible with Neurosuite

  C++

  •11 fork•22 stars•00 issues•00 pull requests•Updated May 15, 2018May 15, 2018