Popular repositories Loading

1. staramr staramr Public

   Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

   Python 203 31

2. mob-suite mob-suite Public

   MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies

   Python 179 33

3. ecoli_serotyping ecoli_serotyping Public

   In silico prediction of E. coli serotype, pathotype and shiga toxin subtyping

   Python 66 12

4. irida irida Public

   ⛔️ DEPRECATED Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology

   Java 44 33

5. refseq_masher refseq_masher Public

   Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database

   Jupyter Notebook 44 4

6. sistr_cmd sistr_cmd Public

   SISTR (Salmonella In Silico Typing Resource) command-line tool

   Python 37 11