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Ensure that PHYX_CONTEXT_JSON is updated at every Phyx standard release

Status: Open.

#170 In phyloref/phyx.js;

· gaurav opened on Apr 29, 2026

Update tests to ignore OpenTree version strings

Status: Open.

#159 In phyloref/phyx.js;

· gaurav opened on Feb 22, 2026

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Phyx.js v1.2.2

Add support for setting nomenclatural codes for individual phylogenies

Status: Open.

#151 In phyloref/phyx.js;

· gaurav opened on Jul 28, 2025

Improve tests for normalization

Status: Open.

#141 In phyloref/phyx.js;

· gaurav opened on Jun 18, 2024

Add tests for normalizing Phyx files and phylogenies

Status: Open.

#140 In phyloref/phyx.js;

· gaurav opened on May 8, 2024

Remove status tracking code from PhylorefWrapper

Status: Open.

#135 In phyloref/phyx.js;

· gaurav opened on Jul 5, 2023

Add methods to return a normalized representation of wrappers

Status: Open.

#134 In phyloref/phyx.js;

· gaurav opened on Jun 21, 2023

Add support for per-phyloreference contributors

Status: Open.

#132 In phyloref/phyx.js;

· gaurav opened on May 24, 2023

Add support for per-phylogeny nomenclatural code

Status: Open.

#121 In phyloref/phyx.js;

· gaurav opened on Dec 14, 2022

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Phyx.js v1.2.2

Document that PhylogenyWrapper.getNodeLabels() and .getParsedNewick() may throw an Error

Status: Open.

#116 In phyloref/phyx.js;

· gaurav opened on Mar 28, 2022

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Phyx.js v1.2.2

toRDF() without providing a base IRI doesn't produce phylorefs and phylogenies

Status: Open.

#113 In phyloref/phyx.js;

· gaurav opened on Jan 25, 2022

Add support for running tutorial notebooks in MyBinder

Status: Open.

#105 In phyloref/phyx.js;

· gaurav opened on Aug 25, 2021