All issues

Search results

sumstats.py mat output .mat files show zero overlapping SNPs in downstream analysis, fixed by reformatting CSV with write.table

Status: Open.

#57 In precimed/python_convert;

· YaxinL opened on Jun 9, 2025

Seeking Guidance on Calculating Effective Sample Size for Continuous Traits in GWAS

Status: Open.

#55 In precimed/python_convert;

· showers14 opened on Nov 2, 2023

clumping problem´s

Status: Open.

#54 In precimed/python_convert;

· mortensallingolesen opened on Aug 10, 2023

sumstats.py clump ##Error

Status: Open.

#53 In precimed/python_convert;

· zhousiquan opened on Jun 2, 2023

issue with running sumstat.py script

Status: Open.

#52 In precimed/python_convert;

· rezarahman12 opened on Feb 9, 2023

sumstats.py how generate Z value

Status: Open.

#50 In precimed/python_convert;

· chenyangjjj opened on Oct 22, 2022

sumstats.py : ix is deprecated

Status: Open.

#49 In precimed/python_convert;

· zillurbmb51 opened on May 25, 2022

exlucde region in ’clump‘

Status: Open.

#48 In precimed/python_convert;

· LiuYunjia opened on Dec 14, 2021

Lift over error: invalid literal for int() with base 10: '2_KI270773v1_alt'

Status: Open.

#47 In precimed/python_convert;

· Dazcam opened on May 19, 2021

Error with 'variantid' function

Status: Open.

#46 In precimed/python_convert;

· WQ-CHENG opened on Mar 18, 2021

Handle A1/REF/ALT from plink2 glm

Status: Open.

#44 In precimed/python_convert;

· ofrei opened on Dec 8, 2020

option to alternate color of chromosomes

Status: Open.

#41 In precimed/python_convert;

· jaamarks opened on Apr 25, 2020