Version 1.0.0 by yguclu · Pull Request #561 · pyccel/psydac

yguclu · 2025-12-28T10:20:14Z

Differences between devel and release can be checked at:
https://github.com/pyccel/psydac/compare/devel..release

List of changes compared to `devel`:

Update version from 0.1 to 1.0.0 in pyproject.toml (also visible in psydac.__version__)
Add command psydac with subcommands compile, mesh, and test
Update installation instructions in files README.md and docs/installation.md
Update instructions for kernel acceleration in file README.md
Update instructions for mesh file generation in file docs/psydac-mesh.md
Add file CHANGELOG.md, to be kept up-to-date in the future
Update list of maintainers and contributors in pyproject.toml and AUTHORS.md
Update copyright year to 2026 in file LICENSE and Sphinx documentation (through docs/source/conf.py)
Update module list and fix some formatting issues in Sphinx documentation
Add Changelog and Tracker entries to project page on PyPI (through pyproject.toml)
Add modules argparse_helpers, main, psydac_compile, psydac_mesh, and psydac_test to psydac.cmd
Remove module psydac.cmd.mesh
Make folder mesh into new module psydac.cad.mesh. Hence, do not define PSYDAC_MESH_DIR environment variable in order to run unit tests
Use package termcolor to allow for colored error messages in CLI
Remove duplications of random_string() across the library. Instead, always use function in psydac.api.utilities
Remove Pytest marks serial and parallel
Stop using custom script mpi_tester.py. Instead, use Pytest plugin pytest-mpi with its mark mpi
Activate many unit tests in psydac.api.ast
Stop trying to import removed extension modules psydac.core.bsp and psydac.core.interface
Remove unused and useless module psydac.pyccel.symbolic.lambdify
Add GitHub action parallel_h5py for installing HDF5 and h5py in parallel mode, and then testing the installation
Prefer pip to python -m pip and pytest to python -m pytest in all GitHub workflows
Where possible, use new psydac test command in GitHub workflows instead of long pytest instructions
Fix various problems in GitHub workflows
Apply changes required by Codacy

In addition to PRs and push events into the `devel` branch, also trigger the workflow for PRs into the `main` branch. Only the `build_docs` job will be run, not the `deploy_docs`.

Using `pip` or `pytest` directly does not import the current working directly into Python's `sys.path`. This avoids accidental mistakes.

FrederikSchnack

LGTM!
I installed the project both ways (TestPyPI and Github) and ran the tests, all seems to work very well.

Added section on running tests and examples after installation.

campospinto

Thanks Yaman. I think this version is pretty good!

**List of changes compared to `devel`** - Update version from 0.1 to 1.0.0 in `pyproject.toml` (also visible in `psydac.__version__`) - Add command `psydac` with subcommands `compile`, `mesh`, and `test` - Update installation instructions in files `README.md` and `docs/installation.md` - Update instructions for kernel acceleration in file `README.md` - Update instructions for mesh file generation in file `docs/psydac-mesh.md` - Add file `CHANGELOG.md`, to be kept up-to-date in the future - Update list of maintainers and contributors in `pyproject.toml` and `AUTHORS.md` - Update copyright year to 2026 in file `LICENSE` and Sphinx documentation (through `docs/source/conf.py`) - Update module list and fix some formatting issues in Sphinx documentation - Add `Changelog` and `Tracker` entries to project page on PyPI (through `pyproject.toml`) - Add modules `argparse_helpers`, `main`, `psydac_compile`, `psydac_mesh`, and `psydac_test` to `psydac.cmd` - Remove module `psydac.cmd.mesh` - Make folder `mesh` into new module `psydac.cad.mesh`. Hence, do not define `PSYDAC_MESH_DIR` environment variable in order to run unit tests - Use package `termcolor` to allow for colored error messages in CLI - Remove duplications of `random_string()` across the library. Instead, always use function in `psydac.api.utilities` - Remove Pytest marks `serial` and `parallel` - Stop using custom script `mpi_tester.py`. Instead, use Pytest plugin `pytest-mpi` with its mark `mpi` - Activate many unit tests in `psydac.api.ast` - Stop trying to import removed extension modules `psydac.core.bsp` and `psydac.core.interface` - Remove unused and useless module `psydac.pyccel.symbolic.lambdify` - Add GitHub action `parallel_h5py` for installing `HDF5` and `h5py` in parallel mode, and then testing the installation - Prefer `pip` to `python -m pip` and `pytest` to `python -m pytest` in all GitHub workflows - Where possible, use new `psydac test` command in GitHub workflows instead of long `pytest` instructions - Fix various problems in GitHub workflows - Apply changes required by Codacy

yguclu mentioned this pull request Dec 28, 2025

Version 1.0.0 #560

Closed

yguclu closed this Dec 29, 2025

yguclu force-pushed the release branch from d2d673a to 5b5235f Compare December 29, 2025 16:27

Apply changes from devel

e5d7505

yguclu reopened this Dec 29, 2025

yguclu added 8 commits December 29, 2025 19:29

Update version to 1.0.0

fff49d0

Do not try to import obsolete f2py extensions

29d2392

Update path to mpi_tester.py in testing workflow

e838e18

Update path to mpi_tester.py in deploy_check workflow

087b9d1

Only run deploy_check workflow on PRs into main

1385113

Run documentation workflow on PRs into main

9209d3d

In addition to PRs and push events into the `devel` branch, also trigger the workflow for PRs into the `main` branch. Only the `build_docs` job will be run, not the `deploy_docs`.

Reactivate most unit tests in psydac/api/ast

e4ce5cd

Allow Parser to process int values

f552b76

yguclu force-pushed the release branch from 80fb0b3 to a5704b4 Compare January 5, 2026 13:09

yguclu added 3 commits January 5, 2026 22:37

Make Codacy happy

f6c20a7

Use numpy.random.default_rng() instead of 'random' module

9c90424

Use random_string() from psydac.api.utilities

8102fdb

yguclu force-pushed the release branch from a5704b4 to 8102fdb Compare January 5, 2026 21:38

yguclu added 5 commits January 5, 2026 22:54

Use subprocess.run() instead of os.system()

3b75e15

Ignore Bandit's complain about partial executable path

d2a54e0

Remove useless module psydac.pyccel.symbolic.lambdify

bd2b062

Improve exception handling in psydac.cad.geometry

f9668d5

Make toarray() consistent between Vector and subclasses

2c0cb3f

yguclu force-pushed the release branch from ea28ebc to 2c0cb3f Compare January 7, 2026 17:02

yguclu added 6 commits January 8, 2026 11:58

Update modules in documentation

f25d3f5

Add psydac to autodoc_mock_imports

ce9e3ca

Fix RST formatting

6c53d34

Fix docstring formatting

7a96114

Import psydac directly in Sphinx conf.py

dd731a1

Don't use python -m pip or python -m pytest:

11475b2

Using `pip` or `pytest` directly does not import the current working directly into Python's `sys.path`. This avoids accidental mistakes.

yguclu added 9 commits January 16, 2026 00:05

Update release date

adb4ff4

Update lists of maintainers and contributors

745bcfb

Add missing argparse import

81e37af

Update installation instructions

c7f25db

Update testing instructions

c1981d1

Update instructions for kernel acceleration

f4f3414

Update documentation on the psydac mesh command

9d7a5ae

Update deploy workflow

a7d3859

Add missing skip condition in deploy_check workflow

fbad3cd

yguclu marked this pull request as ready for review January 16, 2026 10:16

yguclu requested a review from a team January 16, 2026 10:30

FrederikSchnack reviewed Jan 16, 2026

View reviewed changes

Comment thread README.md

FrederikSchnack reviewed Jan 16, 2026

View reviewed changes

Comment thread scripts/mpi_tester.py

FrederikSchnack reviewed Jan 16, 2026

View reviewed changes

Comment thread AUTHORS

FrederikSchnack previously approved these changes Jan 16, 2026

View reviewed changes

Rename Installation to Installation details in Sphinx docs

f8803ae

campospinto reviewed Jan 16, 2026

View reviewed changes

Comment thread docs/installation.md

yguclu added 4 commits January 16, 2026 23:31

Make folder mesh into module psydac.cad.mesh

ad84306

Update testing instructions: no need for PSYDAC_MESH_DIR

4e1a621

Update workflows: no need for PSYDAC_MESH_DIR

d983dbe

Update release date in CHANGELOG

1063d9b

yguclu dismissed FrederikSchnack’s stale review via 1063d9b January 16, 2026 22:51

yguclu added 2 commits January 17, 2026 00:05

Add mini-section on tests and examples to installation.md

50ed25e

Added section on running tests and examples after installation.

Update release date in CHANGELOG (again)

e89faa9

campospinto approved these changes Jan 19, 2026

View reviewed changes

yguclu merged commit 2dc8aba into main Jan 19, 2026
9 checks passed

yguclu deleted the release branch January 19, 2026 07:59

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Version 1.0.0 - #561

Version 1.0.0#561
yguclu merged 68 commits into
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yguclu commented Dec 28, 2025 •

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yguclu commented Dec 28, 2025 • edited Loading Uh oh! There was an error while loading. Please reload this page.

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yguclu commented Dec 28, 2025 •

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List of changes compared to `devel`: