Add Plant Imager v3 support to REST API - #108
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- Detect Plant Imager v2 API when `'object'` exists and is non‑empty, extracting `species`, `environment`, and `plant_id`.
- Add fallback for Plant Imager v3 API by reading `scan_md.get('Metadata', {'object': {}})['object']`.
- Map v3 `growth_environment` field to the `environment` metadata key.
- Ensure `plant` metadata is populated from `plant_id` for both API versions.
- Updated inline comments to clarify version‑specific handling.
- Detect `ScanPath` in `scan_md` and compute workspace `x`, `y`, `z` ranges using `center_x`, `center_y` and pipeline bounding box (fallback to `-750` for `z`). - Construct `scan_info["workspace"]` as a dict with ±150 offsets around the center coordinates. - Preserve original fallback to `scan_md['workspace']` or image metadata when `ScanPath` is absent. - Add detailed comments explaining how the workspace is used for centering the plant and a FIXME note for future `position` parameter.
ArthurLuciani2
approved these changes
Jul 29, 2026
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ScanPathinscan_mdand compute a workspace range (x,y,z) using the scan center and pipeline bounding box (fallbackz = -750).scan_info["workspace"]with offsets around the computed center coordinates.scan_md['workspace']or image metadata whenScanPathis missing.scan_md['Metadata']['object'], mapgrowth_environmentto theenvironmentkey, and ensureplant_idis stored underplant.'object'field) for backward compatibility.FIXMEnote for futurepositionparameter handling.