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1. flowMagic flowMagic Public

   flowMagic is an R package for automated bivariate gating of flow cytometry (FCM) data. It uses a machine-learning model trained on both experts data and a large, high-quality FCM dataset generated …

   R 12 1

2. exeter-cytomics/MACSimaCellSeg exeter-cytomics/MACSimaCellSeg Public

   Reproducible workflows for benchmarking, adapting, and improving automatic cell segmentation methods for MACSima multiplex microscopy images, including Cellpose-SAM, InstanSeg, Mesmer, Docker envir…

   Jupyter Notebook

3. exeter-cytomics/AlgaeScan exeter-cytomics/AlgaeScan Public

   Machine learning pipeline for the automatic identification of algae species using flow cytometry data

   R 2

4. flowSim flowSim Public

   R package to identify and remove redundant information in bivariate flow cytometry data, in order to improve the quality of the training sets for machine learning algorithms.

   R 2 1

5. flowSim_test_data flowSim_test_data Public

   Test data used to evaluate flowSim performance

6. exeter-cytomics/GW4_cytometry_data_science_workshop exeter-cytomics/GW4_cytometry_data_science_workshop Public

   Repository for storing scripts, information and important files related to the GW4 Cytometry Data Science workshop organized yearly by the Centre for Cytomics at the University of Exeter