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java.io.IOException: Unable to parse header with error: Your input file has a malformed header: VCFv4.4 is not a supported version #14

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java.io.IOException: Unable to parse header with error: Your input file has a malformed header: VCFv4.4 is not a supported version#14

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@fellen31
fellen31
opened on Sep 24, 2025

Hi, I'm trying to use nft-vcf on a v4.4 VCF, but I'm getting:

java.io.IOException: Unable to parse header with error: Your input file has a malformed header: VCFv4.4 is not a supported version, for input source: file:///...

Looks like a htsjdk problem, but perhaps nft-vcf could use OPTIMISTIC_VCF_4_4?

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