contig/chr name error

[WJunHao]

Hello, Developer! During use, I encountered an issue with the following error messages:

Merging temp files ...
Error: Invalid contig id (1595801600)
Error: Invalid shared data
Error: Invalid contig id (1595801600)
Error: Invalid shared data
Error: I/O failed while merging
Error: failed merging temp files

My species has three chromosomes, and although the merging process failed, each chromosome was filled in the results. Can I manually merge the filled chromosome results? My chromosome format is '1, 2, 3'.

[jonathonl]

What operating system are your running on and how did you install Minimac4? Can you verify that you have enough disk space in /tmp to store the results? Another possibility is that you need to add contig headers (see example below) to the VCF you are imputing.

##contig=<ID=1>
##contig=<ID=2>
##contig=<ID=3>

[WJunHao]

Thank you for your reply. As per your suggestion, I added ##, and everything is working fine now.