amr-surveillance

Official repository for the Five-day Hands-on Workshop Program on Bioinformatics for One Health and Pathogen-Specific Research (March 16-20, 2026), organized by CSIR-IGIB & ICMR.

Reanalysis of the Global Typhoid Genomics Consortium dataset testing whether assembly-quality screening changes reported AMR prevalence in Salmonella Typhi and genotype-call accuracy.

Private AMRIT reference platform for local-first antimicrobial-resistance laboratory workflows, aggregate-safe national surveillance, One Health coordination, and standards-based interoperability.

pLIN: Plasmid Lineage Identification Number — Hierarchical, permanent, reference-free classification of bacterial plasmids with AMR surveillance. Citation REQUIRED for all use.