Reproducible Pan-Cancer transcriptomic analysis pipeline evaluating immune cell infiltration (CIBERSORT) and immune checkpoint expression (PD-L1/CTLA-4) across TCGA cohorts.
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Aug 8, 2026 - Python
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immune-profiling
Here are 4 public repositories matching this topic...
Targeted long-read transcriptomic profiling pipeline for FFPE tumor samples using Oxford Nanopore sequencing.
bioinformatics nanopore transcriptomics msi long-read-sequencing colorectal-cancer ffpe immune-profiling
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Apr 26, 2026 - Shell
This project explores how immune activation, checkpoint suppression, and T-cell exhaustion shape tumour behavior and survival outcomes in lung adenocarcinoma using TCGA-LUAD transcriptomic data. By integrating immune-related gene expression into composite immune balance models, the analysis identifies distinct tumour microenvironment states.
bioinformatics computational-biology precision-medicine immunotherapy tumour-microenvironment ai-in-healthcare immune-profiling
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May 15, 2026 - Python
A reproducible workflow for identifying immune-cell populations and candidate T-cell subtypes from single-cell RNA data.
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Sep 7, 2026 - Python
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