miguel-porto / eicm Star 6 Code Issues Pull requests Explicit Interaction Community Models cran species-distribution-modelling joint-models ecological-modelling jsdm species-interactions community-modeling missing-covariates interaction-network Updated May 8, 2023 R
solislemuslab / minaa Star 5 Code Issues Pull requests MiNAA aligns a pair of networks based their topologies and biologies. graal microbiome orca graphlets network-alignment graph-algorithm interaction-network Updated Dec 1, 2024 C++
daisybio / keypathwayminer-R Star 5 Code Issues Pull requests R package for de novo pathway enrichment using KeyPathwayMiner r systems-biology standalone r-package omics gene-expression-profiles biological-networks pathway-enrichment-analysis multiomics singelcell interaction-network de-novo-pahtway-enrichment Updated Jun 12, 2023 R
marmello77 / pantrop Star 0 Code Issues Pull requests Supplement to the manuscript Clement et al. (in prep.) designed to serve as a code-only repository for the analyses presented. data-science network-science tropical-forest seed-dispersal tropics species-interactions frugivory frugivores mutualism ecological-networks interaction-network Updated Aug 5, 2026 R