A Nextflow workflow to generate lift over files for any pair of genomes
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Aug 26, 2026 - Nextflow
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nextflow-workflow
Here are 20 public repositories matching this topic...
A collection of unexpected challenges and learnings with nextflow and nf-core.
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Oct 17, 2023 - Shell
A proof of concept daisy-chaining Nextflow workflows
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Sep 3, 2026 - Nextflow
Nextflow workflow syntax highlighting and snippets for Sublime Text 4
syntax-highlighting snippets nextflow sublime-text sublime-text-3 editor-plugin nextflow-workflow sublime-text-4 nextflow-dsl2
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Jan 8, 2025 - Python
This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) and its posterior deployment.
nextflow docker-container docker-image recipe singularity singularity-containers nextflow-scif nextflow-pipelines scif-recipe nextflow-workflow
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Feb 25, 2019 - HTML
Nextflow workflow syntax highlighting and snippets for Sublime Text 4
syntax-highlighting snippets nextflow sublime-text editor-plugin nf-core nextflow-workflow sublime-text-4 nextflow-dsl2
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Jan 8, 2025 - Python
nowayout is an ultra-fast automated software pipeline for taxonomic classification of Eukaryotic mitochondrial reads.
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Jun 11, 2026 - Nextflow
A Nextflow shotgun metagenomics pipeline with Illumina reads. / Pipeline Nextflow de métagénomique de type shotgun avec des séquences Illumina.
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Mar 4, 2026 - Nextflow
Nextflow pipelines for mapping and differential expression analysis
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Sep 6, 2025 - Nextflow
A Nextflow workflow for scalable distributed taxonomy-enabled NCBI Blast and Diamond homology searches
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Dec 1, 2025 - Nextflow
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Oct 24, 2019 - Nextflow
Working through NextFlow tutorials. See https://github.com/nextflow-io/training
docker groovy workflow pipeline nextflow groovy-language pipelines workflows dag directed-acyclic-graph nextflow-pipeline nextflow-pipelines nextflow-workflow nextflow-language nextflow-process nextflow-dsl2 nextflow-lang nextflow-tutorial nextflow-tutorials nextflow-training
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Aug 20, 2023 - HTML
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Oct 27, 2025 - Nextflow
Introduction to the Nextflow Workflow Language
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Dec 29, 2025 - Nextflow
Nextflow Scripts/Workflows for Bioinformatics
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Mar 10, 2023 - Nextflow
Comprehensive notes, workflows, and projects from 2025 research trainings on 16S rRNA, scRNA-seq, Nextflow, Galaxy, plant & marine genomics, and cancer bioinformatics, including hands-on Galaxy and reproducible pipeline .
bash bioinformatics genomics reproducible-research scrna-seq galaxy quarto 16s-rrna nextflow-workflow plant-genomics marine-genomics training-notes cancer-bioinformatics
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Mar 16, 2026 - Nextflow
A simple pipeline to test some basic nextflow features.
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Feb 28, 2021 - Nextflow
A Modular Nextflow Workflow for Reproducible Bioactive Peptide Classification
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Jul 6, 2026 - HTML
A software-centric, self-contained skill library for bioinformatics. Supports native, Nextflow-style and Snakemake-style implementations. Designed for both human use and AI agents.
workflow bioinformatics snakemake nextflow skills bioinformatics-pipeline reproducibility snakemake-workflows ai-agents snakemake-workflow snakemake-pipelines nextflow-pipeline nextflow-pipelines nextflow-workflow snakemake-pipeline ai-agent
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Sep 4, 2026 - Python
A beginner-friendly bioinformatics pipeline built using Nextflow to automate FASTQ quality trimming and Bowtie2 sequence alignment. This project demonstrates core workflow concepts including processes, channels, inputs/outputs, and reproducible NGS data processing.
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Dec 4, 2025 - Shell
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