sirna

A comprehensive collection of long inverted repeats in 424 eukaryotic genomes

python script that picks suitable targets for siRNA with off-target optimization

A Python loader for 18k+ siRNA knockdown-efficacy records across 8 sources, each source has its own license.

Off-target analysis of siRNA knock down paired with RNAseq

This is the official codebase for RESM: Capturing sequence and structure encoding of RNAs by mapped transfer learning from ESM (evolutionary scale modeling) protein language model

shRNA 2.0

Characterization of small RNA pathways

HIVsirDB: A Database of HIV Inhibiting siRNAs

Reusable software components for supervised learning applied to siRNA.

RSC(Reusable Software Components) for supervised learning applied to siRNA with test cases.

Modernized siRNA selection web platform – refactored for Ubuntu/nginx, reCAPTCHA-secured login, modular Perl CGI + PHP stack

OmniScreen-AI: Multi-modal AI drug screening for PD-L1 — small molecules, peptides & nucleic acids. RDKit · AutoDock Vina · ESM-2 · AlphaFold3 · OpenMM · MM-PBSA. Notebook-driven Colab→GPU pipeline.

Fast and simple small RNA read alignment and visualisation

Empirico — independent third-party profile of a public API surface, by API Evangelist. Empirico is a biotechnology company that powers therapeutic discovery with human genetics and small interfering RNA (siRNA) medicines. Combining internal capabilities in human genetics and siRNA chemistry with partner expertise, the company identifies naturally o

Soufflé Therapeutics — independent third-party profile of a public API surface, by API Evangelist. Soufflé Therapeutics is a genetic medicine company developing nucleic acid (siRNA) therapeutics that use proprietary cell-specific ligand-conjugation technology to target and deliver treatments to specific cell types.