Skip to content

tskit-dev/tstrait

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

293 Commits
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

tstrait

License PyPI version Supported Python Versions Docs Build Tests codecov

tstrait is a quantitative trait simulator of tskit tree sequences. It supports simulation of quantitative traits, sampling genetic effect sizes from various distributions, modelling pleiotropic phenotypes and environmental noise, and computing per‑individual genetic values given the effect sizes of causal mutations.

Documentation: https://tskit.dev/tstrait/docs/stable/ (latest: https://tskit.dev/tstrait/docs/latest/) Learn more about tree sequences: https://tskit.dev/learn/

Installation

python -m pip install tstrait
# or
conda install -c conda-forge tstrait

Quickstart

See the documentation quickstart and examples: https://tskit.dev/tstrait/docs/stable/

About

Quantitative trait simulation for ARGs

Topics

Resources

License

Code of conduct

Contributing

Stars

Watchers

Forks

Contributors