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@vari-bbc

VAI BBC

Van Andel Institute Bioinformatics and Biostatistics Core
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  1. rnaseq_workflow rnaseq_workflow Public

    snakemake workflow for bulk RNA-seq workflow using STAR-edgeR

    Python 14 17

  2. Biscuit_Snakemake_Workflow Biscuit_Snakemake_Workflow Public archive

    Snakemake Workflow For WGBS Data

    Python 3 12

  3. bioinfo_workshop_2025 bioinfo_workshop_2025 Public

    Jupyter Notebook 3

  4. scRNAseq scRNAseq Public

    Python 2

  5. piwi_RNA_pipeline piwi_RNA_pipeline Public

    Scripts for heirarchical assignment of reads to feature biotypes

    Perl 1

  6. Mouse_Brain_Heatmap Mouse_Brain_Heatmap Public

    rmd with the framework to create Mouse brain heatmaps and analyze data

    1

Repositories

Showing 10 of 52 repositories
  • variants-gatk4 Public
    vari-bbc/variants-gatk4's past year of commit activity
    Python 1 GPL-3.0 0 1 0 Updated Sep 9, 2026
  • rnaseq_workflow Public

    snakemake workflow for bulk RNA-seq workflow using STAR-edgeR

    vari-bbc/rnaseq_workflow's past year of commit activity
    Python 14 GPL-3.0 17 3 0 Updated Sep 8, 2026
  • amplicon_var_reports Public

    Creates an IGV report of each amplicon using the called VCF as site table.

    vari-bbc/amplicon_var_reports's past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Aug 27, 2026
  • RNA-Seq-Workflow-App Public
    vari-bbc/RNA-Seq-Workflow-App's past year of commit activity
    R 1 GPL-3.0 0 3 0 Updated Jul 23, 2026
  • Mouse-to-Usable_M2U Public
    vari-bbc/Mouse-to-Usable_M2U's past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Jun 26, 2026
  • souper-star Public

    Fork of the souper-star repo from FredHutch.

    vari-bbc/souper-star's past year of commit activity
    Nextflow 0 MIT 0 0 1 Updated Jun 12, 2026
  • .github Public
    vari-bbc/.github's past year of commit activity
    0 0 0 0 Updated May 18, 2026
  • VBCS-1645 Public

    Nextflow pipeline for 1645

    vari-bbc/VBCS-1645's past year of commit activity
    Nextflow 0 GPL-3.0 0 0 0 Updated May 6, 2026
  • sciCT_pipeline Public

    A Nextflow implementation of the sciCTextract demux from mfitzgib.

    vari-bbc/sciCT_pipeline's past year of commit activity
    Nextflow 0 GPL-3.0 1 0 1 Updated Apr 15, 2026
  • snm3C-seq Public

    snm3C-seq processing

    vari-bbc/snm3C-seq's past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Apr 15, 2026
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