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Fix shell injection via workspace path in _peek_file_lines (#119)
container-build
#86:
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Fix shell injection via workspace path in _peek_file_lines
container-build
#85:
Pull request
#119
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5m 33s
fix/shell-injection-workspace-path
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TODO: record the matrix coverage additions and the repo sync
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#84:
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Matrix: cover protein+DNA+RNA together, and nucleic-acid-only inputs …
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Matrix: cover protein+DNA+RNA together, and nucleic-acid-only inputs
container-build
#82:
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#118
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5m 48s
feat/three-way-entity-coverage
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STATUS: 62/62 matrix on folding_260825.2, StabiliNNator included
container-build
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STATUS: folding_260825.2 in production, StabiliNNator end to end on c…
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TODO: 260825.1 pending, stabiliNNator app fixes all merged
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Add StabiliNNator matrix coverage (S01-S03) (#117)
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Add StabiliNNator matrix coverage (S01-S03)
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Add StabiliNNator matrix coverage (S01-S03)
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#76:
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feat/matrix-stabilinnator-coverage
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STATUS/TODO: folding_260821.3 in production, 59/59, tool installs pinned
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Commit the 260821.2 probe + O01-O06 reports (0/6: openfold3 0.5.0 drift)
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STATUS/TODO: 260821.2 broken (openfold3 0.5.0 drift), 260821.3 pinned…
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Commit the 2026-08-21 test reports (deploy probes, rollback probe, 42…
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Drop the superseded bvbrc-web-90 patch note (#1400 merged)
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STATUS/TODO: 260821.1 on alpha, matrix 42/44, #114 fixed, 260821.2 bu…
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Fix #114: select the OpenFold query dir by content, not by exclusion …
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Fix #114: select the OpenFold query dir by content, not by exclusion
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fix/114-openfold-query-dir
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TODO: reconcile after #104-#109 landed
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Fix #104, #105, #107: CWL duplicate, PAE coverage, env restore (#113)
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Fix #108: refuse to assign chain IDs past Z instead of wrapping to A …
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Fix #106: prune raw_output/ before the workspace upload (#111)
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Fix #104, #105, #107: CWL duplicate, PAE coverage, env restore
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#63:
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5m 51s
fix/104-105-107-cwl-and-tests
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Fix #108: refuse to fold when chain IDs are exhausted
container-build
#62:
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5m 13s
fix/108-chain-id-exhaustion
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